Browse Element(s) Details


Os.3560.2.S1_x_at

Description gb:AK103364.1
DB_XREF= gi:32988573
TID=Os.3560.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126N23, full insert sequence.
FL= gb:AK103364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1289011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12880Os.3558.1.S1_at11/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12880Os.3558.2.S1_x_at10/111+7125951..7134131VHS domain containing protein, expressed
LOC_Os01g12890Os.3560.1.S1_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.2.S1_x_at11/111+7154582..7161187expressed protein
LOC_Os01g12890Os.3560.1.S1_a_at11/111+7154582..7161187expressed protein
LOC_Os01g12900Os.12209.1.S1_a_at11/111+7161399..7164204RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os01g12910Os.3561.1.S1_at11/111+7170420..7172573thioesterase family protein, expressed
LOC_Os01g12920Os.49482.1.S1_at11/111+7172909..7173868thioesterase family protein, expressed
LOC_Os01g12930OsAffx.22082.1.S1_x_at10/111+7174157..7180765U-box domain containing protein, expressed
LOC_Os01g12940OsAffx.23221.1.S1_s_at11/111+7182285..7184840Phosphorylase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3560.2.S1_x_at--362--3131Chr01:7159834..7159858 (25 bp)
AATTATGCATCTCGCCAACCAGTAA
LOC_Os01g12890
Os.3560.2.S1_x_at--402--4411Chr01:7159863..7159887 (25 bp)
GCCACTGGACCGCTATGCTGAAAGA
LOC_Os01g12890
Os.3560.2.S1_x_at--860--1371Chr01:7159885..7159909 (25 bp)
AGAGCGGTTAACCAGGTCCATGCAA
LOC_Os01g12890
Os.3560.2.S1_x_at--305--6911Chr01:7159986..7160010 (25 bp)
GTATCCTAAAGAATCCATGCCTGCG
LOC_Os01g12890
Os.3560.2.S1_x_at--1153--4271Chr01:7160005..7160029 (25 bp)
CCTGCGACGCATCTTCTGAGAATGA
LOC_Os01g12890
Os.3560.2.S1_x_at--758--131Chr01:7160043..7160067 (25 bp)
ATTAGCAAGCTTCCCCAACTATGGA
LOC_Os01g12890
Os.3560.2.S1_x_at--361--5371Chr01:7160191..7160215 (25 bp)
GAAGACTTATCACGGCATCAGCTGC
LOC_Os01g12890
Os.3560.2.S1_x_at--378--4751Chr01:7160211..7160235 (25 bp)
GCTGCATGATCTGCACAGACCTTTA
LOC_Os01g12890
Os.3560.2.S1_x_at--1118--10451Chr01:7160233..7160257 (25 bp)
TTACGCCCACATCCTAGAGTTGGTG
LOC_Os01g12890
Os.3560.2.S1_x_at--958--4931Chr01:7160259..7160283 (25 bp)
GCTTGGCTCCTTGCTGCAGAAGGAA
LOC_Os01g12890
Os.3560.2.S1_x_at--407--2571Chr01:7160290..7160314 (25 bp)
AACTGGTCGGAGAACTGTGGCACAC
LOC_Os01g12890
Target Sequence 
AATTATGCATCTCGCCAACCAGTAATTGCGCCACTGGACCGCTATGCTGAAAGAGCGGTTAACCAGGTCCATGCAAGAAA
TTTTCCAAGCACAATAGCAACCATGGAAGCGAGTAAGTTATGTGATCGGAGAAATGCTGGACAAGTAGTCTTGTATCCTA
AAGAATCCATGCCTGCGACGCATCTTCTGAGAATGATGGATCCATCAACATTAGCAAGCTTCCCCAACTATGGAACTTCT
AGCAGGAACCAGATGGAGTCTCAACTTCATAATTCTCAGTATGCACATAATCAGTACAAAGGATCAACCAGCACATCATA
TGGCAGTAACCTGAATGGAAAGATTCCATTGACATTCGAAGACTTATCACGGCATCAGCTGCATGATCTGCACAGACCTT
TACGCCCACATCCTAGAGTTGGTGTGCTTGGCTCCTTGCTGCAGAAGGAAATTGCAAACTGGTCGGAGAACTGTGGCACA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3560.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis