Browse Element(s) Details


Os.35826.1.S1_at

Description gb:AK064154.1
DB_XREF= gi:32974172
TID=Os.35826.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E12, full insert sequence.
FL= gb:AK064154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5420010/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed
LOC_Os02g54170Os.51970.1.S1_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54170OsAffx.24863.1.S1_x_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54180Os.51270.1.S1_at11/112+33214492..33215251expressed protein
LOC_Os02g54190Os.47330.1.S1_at11/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54190Os.54835.1.S1_s_at1/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54200Os.35826.2.S1_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.2.S1_x_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.1.S1_at10/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54210OsAffx.20387.1.S1_x_at2/112+33229770..33235100retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54220OsAffx.31069.1.S1_x_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.22004.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.31069.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54230OsAffx.12636.1.S1_at11/112+33240246..33241154hypothetical protein
LOC_Os02g54240OsAffx.24862.1.S1_at11/112+33243932..33245233F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35826.1.S1_at--520--2811Chr02:33220113..33220137 (25 bp)
AAGATCTTTCGTGATGTGCTCCTGA
LOC_Os02g54200
Os.35826.1.S1_at--128--6271Chr02:33220101..33220125 (25 bp)
GATGTGCTCCTGACAGCATCATGCA
LOC_Os02g54200
Os.35826.1.S1_at--410--1431Chr02:33218580..33218604 (25 bp)
AGAAAAACTCCAACAACTCACCCAG
LOC_Os02g54200
Os.35826.1.S1_at--1129--9651Chr02:33218563..33218587 (25 bp)
TCACCCAGTTAATCCAGTCATCAGA
LOC_Os02g54200
Os.35826.1.S1_at--226--7511Chr02:33218449..33218473 (25 bp)
GTGGTAAACCAGATCTTCAGACTAA
LOC_Os02g54200
Os.35826.1.S1_at--856--1391Chr02:33218431..33218455 (25 bp)
AGACTAACAAATCCTCACACACTAA
LOC_Os02g54200
Os.35826.1.S1_at--663--10151NONE
TATCTGCTTTTTTCTCCCCTATTAA
NONE
Os.35826.1.S1_at--146--10391Chr02:33218304..33218328 (25 bp)
TTTTCTGTCTTGTTAGAGTGCACCG
LOC_Os02g54200
Os.35826.1.S1_at--1155--6091Chr02:33218289..33218313 (25 bp)
GAGTGCACCGTTTTTGTGCGAACAT
LOC_Os02g54200
Os.35826.1.S1_at--609--9151Chr02:33218273..33218297 (25 bp)
TGCGAACATTTACTCCTTTATCCAT
LOC_Os02g54200
Os.35826.1.S1_at--1144--791Chr02:33218243..33218267 (25 bp)
AGGAGTCCAGGACCATTTCCTTTGC
LOC_Os02g54200
Target Sequence 
AAGATCTTTCGTGATGTGCTCCTGACAGCATCATGCACGCAAGCATCCTCAACTGCAAGATGAAAAAGGCTTTGGCGTTA
ATGGAACATTCTCACACCAACAGAGGTCATTGGAGTGCTGGCCTAAGCAACAGCTCGAAGGGATTAACAAAGGTATCGTA
CAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAATCCAGTCATCAGATAGGAGCAAGATCAAGCATCATGT
CAAGATCAGTCAATCAAGTCATCTAATTAGAACCCAAATCACATTAGAAAAAAGATCAGAATCGTGTGGTAAACCAGATC
TTCAGACTAACAAATCCTCACACACTAACAGAACAAAAAGTTTCTGCAAACAGAAACAGAATGTCAGTAAGGACAAGAGG
ACAGAAACAAATCTTTATCTGCTTTTTTCTCCCCTATTAACCTTTCACTTTTTTCTGTCTTGTTAGAGTGCACCGTTTTT
GTGCGAACATTTACTCCTTTATCCATTAATCAGGAGTCCAGGACCATTTCCTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis