Browse Element(s) Details


Os.35826.2.S1_x_at

Description gb:AK065616.1
DB_XREF= gi:32975634
TID=Os.35826.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027P06, full insert sequence.
FL= gb:AK065616.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5420011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54160Os.2354.1.S1_at11/112+33193938..33196812ethylene response element binding protein, putative, expressed
LOC_Os02g54170Os.51970.1.S1_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54170OsAffx.24863.1.S1_x_at11/112+33210608..33213783Leucine Rich Repeat family protein, expressed
LOC_Os02g54180Os.51270.1.S1_at11/112+33214492..33215251expressed protein
LOC_Os02g54190Os.47330.1.S1_at11/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54190Os.54835.1.S1_s_at1/112+33215400..33217726Pectinesterase, putative, expressed
LOC_Os02g54200Os.35826.2.S1_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.2.S1_x_at11/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54200Os.35826.1.S1_at10/112+33218240..33221808mTERF family protein, expressed
LOC_Os02g54210OsAffx.20387.1.S1_x_at2/112+33229770..33235100retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54220OsAffx.31069.1.S1_x_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.22004.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54220OsAffx.31069.1.S1_at1/112+33235430..33238490retrotransposon protein, putative, unclassified
LOC_Os02g54230OsAffx.12636.1.S1_at11/112+33240246..33241154hypothetical protein
LOC_Os02g54240OsAffx.24862.1.S1_at11/112+33243932..33245233F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35826.2.S1_x_at--1105--51Chr02:33220374..33220398 (25 bp)
ATTGAAGGCGATGCACCAGGACCCT
LOC_Os02g54200
Os.35826.2.S1_x_at--973--4331Chr02:33220359..33220383 (25 bp)
CCAGGACCCTCCTTTACAATGGGAG
LOC_Os02g54200
Os.35826.2.S1_x_at--448--8191Chr02:33220334..33220358 (25 bp)
GGAAGCTTCAGATGCCAGGCAGCCA
LOC_Os02g54200
Os.35826.2.S1_x_at--427--931Chr02:33220318..33220342 (25 bp)
AGGCAGCCAGTTAGTGTCGGATGAT
LOC_Os02g54200
Os.35826.2.S1_x_at--163--8311Chr02:33219427..33219451 (25 bp)
GGCTTTGGCGTTAATGGAACATTCT
LOC_Os02g54200
Os.35826.2.S1_x_at--363--8171Chr02:33219412..33219436 (25 bp)
GGAACATTCTCACACCAACAGAGGT
LOC_Os02g54200
Os.35826.2.S1_x_at--442--3431Chr02:33219394..33219418 (25 bp)
CAGAGGTCATTGGAGTGCTGGCCTA
LOC_Os02g54200
Os.35826.2.S1_x_at--782--7291Chr02:33219380..33219404 (25 bp)
GTGCTGGCCTAAGCAACAGCTCGAA
LOC_Os02g54200
Os.35826.2.S1_x_at--970--6951Chr02:33219342..33219366 (25 bp)
GTAGCAGATGTACTCCGTGACAGCC
LOC_Os02g54200
Os.35826.2.S1_x_at--110--7291Chr02:33219219..33219243 (25 bp)
GTGCCAGTGATGAAAAATCCTGTTC
LOC_Os02g54200
Os.35826.2.S1_x_at--979--5591Chr02:33219191..33219215 (25 bp)
GAAATTTTACTCTAGGACACCATAT
LOC_Os02g54200
Target Sequence 
ATTGAAGGCGATGCACCAGGACCCTCCTTTACAATGGGAGGGAAGCTTCAGATGCCAGGCAGCCAGTTAGTGTCGGATGA
TGATAATGCGGAAAGTGACGATGAGGTGCTATATAGACGAACAGTCATGCTCTAATTNNNNNNNNNANNNNNCNNNAGNN
NNTNNNTNNNNNNCNCNNNNNNNCNTNNNNNNNNCAAGCATCCTCAACTGCAAGATGAAAAAGGCTTTGGCGTTAATGGA
ACATTCTCACACCAACAGAGGTCATTGGAGTGCTGGCCTAAGCAACAGCTCGAAGGGATTAACAAAGGTAGCAGATGTAC
TCCGTGACAGCCTNTGGNCTTTGGTTATGTGCGACTTNGAGNCGAAANCTGGAGATTCNTAGACCAGTTTTGGTAGGAGA
TCAAAGAGTAGCTGTGGTAGANTGGAGATAATGTGCCAGTGATGAAAAATCCTGTTCNCTGAAATTTTACTCTAGGACAC
CATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35826.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis