Browse Element(s) Details


Os.35897.1.A1_at

Description gb:AK065269.1
DB_XREF= gi:32975287
TID=Os.35897.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein, similar to Arabidopsis thaliana chromosome 5, At5g18940 (P0503D09.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002K24, full insert sequence.
FL= gb:AK065269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4528011/11Mo25 protein, putative, expressed
LOC_Os08g326301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein
LOC_Os07g45250Os.46988.1.A1_at11/117+26999916..27002619transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35897.1.A1_at--147--8711Chr07:27016201..27016224 (24 bp)
TGTGCCTTCCACATTTTCAAGGTAT
LOC_Os07g45280
Os.35897.1.A1_at--169--3531Chr07:27016980..27017004 (25 bp)
CATTCATCGGTATAGACCCTCAAGA
LOC_Os07g45280
Os.35897.1.A1_at--312--5591Chr07:27017003..27017027 (25 bp)
GAAATTCAAATCCATCCGTTCAAGT
LOC_Os07g45280
Os.35897.1.A1_at--944--551Chr07:27017016..27017040 (25 bp)
ATCCGTTCAAGTTTCGCTGGTCAAG
LOC_Os07g45280
Os.35897.1.A1_at--733--2751Chr07:27017038..27017062 (25 bp)
AAGAAATGTGATCCCTTTCTTCCCT
LOC_Os07g45280
Os.35897.1.A1_at--716--9271Chr07:27017058..27017082 (25 bp)
TCCCTTCTTGTTTTTAAGACCTGTG
LOC_Os07g45280
Os.35897.1.A1_at--558--5831Chr07:27017075..27017099 (25 bp)
GACCTGTGTAATGTGATCCCTGTAT
LOC_Os07g45280
Os.35897.1.A1_at--560--5491Chr07:27017153..27017177 (25 bp)
GAACACTTTACCATTGCTGTGTGCA
LOC_Os07g45280
Os.35897.1.A1_at--317--10712Chr08:20076529..20076569 (24 bp)
TTGCTGTGTGCATTTCCATTGTGAA
LOC_Os08g32630
Os.35897.1.A1_at--613--1931Chr07:27017204..27017228 (25 bp)
ACTGGTGGGCACATGTTCGAATTAT
LOC_Os07g45280
Os.35897.1.A1_at--975--1271Chr07:27017284..27017308 (25 bp)
AGATCTGTGACAGCAGCTATCGAAT
LOC_Os07g45280
Target Sequence 
TGTGCCTTCCACATTTTCAAGGTATTTGTTGCCAATCCAAACAAGCCTCGTGATATTATTCAAGTTTTGGTAGACAATCA
CAGAGAACTGTTGAAGCTACTAGGCAATCTTCCCACAAGCAAAGGTGAAGACGAGCAACTTGAAGAGGAGAGAGATTTAA
TCATCAAGGAAATCNAGAAGCTTGTGCATTCATCGGTATAGACCCTCAAGAAATTCAAATCCATCCGTTCAAGTTTCGCT
GGTCAAGAAATGTGATCCCTTTCTTCCCTTCTTGTTTTTAAGACCTGTGTAATGTGATCCCTGTATAGAGGGTGTTTATC
ATAGGGAAATAGTTTGACCAAGAAGTATGTTGGTCACAAGAACACTTTACCATTGCTGTGTGCATTTCCATTGTGAAAAT
TTTTGGAACAACTGGTGGGCACATGTTCGAATTATGAATGACAGCTGATGTCAAACATATCTTTGTTCATAATTGAAATG
NAATATTTCGAGATCTGTGACAGCAGCTATCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35897.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis