Browse Element(s) Details


Os.35959.1.S1_at

Description gb:AK064739.1
DB_XREF= gi:32974757
TID=Os.35959.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1343_B12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D04, full insert sequence.
FL= gb:AK064739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0506010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein
LOC_Os07g05040Os.5363.1.S1_at11/117+2221229..2223216cadmium-induced protein, putative, expressed
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein
LOC_Os07g05084OsAffx.1499.1.S1_at11/117+2241974..2243857expressed protein
LOC_Os07g05100OsAffx.16092.1.S1_at11/117+2251212..2252853hypothetical protein
LOC_Os07g05110Os.18494.1.S1_at10/117+2255620..2257435Patatin-like phospholipase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35959.1.S1_at--364--951Chr07:2231686..2231710 (25 bp)
AGGAACATCTCTGGCAAACTCGACG
LOC_Os07g05060
Os.35959.1.S1_at--532--1851Chr07:2231666..2231688 (23 bp)
ACGACTTGTGTTCTCGTCCGAGGAC
LOC_Os07g05060
Os.35959.1.S1_at--540--10331Chr07:2230710..2230734 (25 bp)
TTTACAACTGGACTAGGCCTCTTTG
LOC_Os07g05060
Os.35959.1.S1_at--1132--9432Chr02:10802039..10802517 (25 bp)
TCGGAATTCCCTTCGTGATTGACAA
NONE
Os.35959.1.S1_at--353--111Chr07:2230542..2230566 (25 bp)
ATTCTGGAGAACGTCTGGGCTTTTC
LOC_Os07g05060
Os.35959.1.S1_at--912--8191Chr07:2230511..2230535 (25 bp)
GGAAGATCCCATACTTTGGACGCTC
LOC_Os07g05060
Os.35959.1.S1_at--672--10851Chr07:2230496..2230520 (25 bp)
TTGGACGCTCCAAGTGATCTATATG
LOC_Os07g05060
Os.35959.1.S1_at--791--6151Chr07:2230470..2230494 (25 bp)
GAGGATGTGAGGCTTATTTCTTTCT
LOC_Os07g05060
Os.35959.1.S1_at--321--1251Chr07:2230314..2230338 (25 bp)
AGTTGTCTGTTTAATCTCGGGCTGA
LOC_Os07g05060
Os.35959.1.S1_at--681--8991Chr07:2230292..2230316 (25 bp)
TGAAGCAATTTGCAGCTCATTCTAG
LOC_Os07g05060
Os.35959.1.S1_at--1141--9991Chr07:2230270..2230294 (25 bp)
TAGCTCCAATATAACACCTGCCAAT
NONE
Target Sequence 
AGGAACATCTCTGGCAAACTCGACGACTTGTGTTCTCGTCCGAGGACCGGAGCTGCAGACATGGATAAAATCAAGGTCAT
GATGAATCAACTTCGTTGGAGTATACCTTTTACAACTGGACTAGGCCTCTTTGTTGGAGTTGTTGTGANAGTTGTACTGG
CGATCAAGTTCGGAATTCCCTTCGTGATTGACAAGTTCGCGCAAGAGTTGGGTATGGTGCTTCAATCAATTGATGCAGAA
GACGTGAAAATGGTTATAGACACCTTTACCAACCTCATTCTGGAGAACGTCTGGGCTTTTCTGGTTGGGAAGATCCCATA
CTTTGGACGCTCCAAGTGATCTATATGAGAGGATGTGAGGCTTATTTCTTTCTCTAAGACTTGATTAGAAGAACAGTGGT
TTAATTTATGCCTGAGTGCGTGCATGCATGCTCTGTTTGATGTGGATGTATAATCTGGATTCAAAGATTAGCTGCGGGCG
TTGGATGTATGCTAGTCTGGGTTTAGTTGTCTGTTTAATCTCGGGCTGAAGCAATTTGCAGCTCATTCTAGCTCCAATAT
AACACCTGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis