Browse Element(s) Details


Os.36345.1.S1_at

Description gb:AK063651.1
DB_XREF= gi:32973669
TID=Os.36345.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423B08.23 (P0423B08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-B02, full insert sequence.
FL= gb:AK063651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6445010/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64410OsAffx.23914.1.S1_at11/111+37708329..37709063uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein
LOC_Os01g64450Os.36345.1.S1_at10/111+37733111..37734090Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64460OsAffx.23915.1.S1_at10/111+37737511..37738223hypothetical protein
LOC_Os01g64470Os.12119.1.S1_at10/111+37738860..37739860Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28

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Gene Ontology Classification
GO idTypeName
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006944biological_processmembrane fusion
GO:0009618biological_processresponse to pathogenic bacteria
GO:0042828biological_processresponse to pathogen
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36345.1.S1_at--1161--2771Chr01:37733502..37733526 (25 bp)
AAGAGCACGATGGTGATCCGGCCGA
LOC_Os01g64450
Os.36345.1.S1_at--236--7791Chr01:37733383..37733407 (25 bp)
GGTGCGTCTCAAGGTGATGGTCTTC
LOC_Os01g64450
Os.36345.1.S1_at--568--8871Chr01:37733369..37733393 (25 bp)
TGATGGTCTTCGTGGACAGCGTCGA
LOC_Os01g64450
Os.36345.1.S1_at--967--1171Chr01:37733345..37733369 (25 bp)
AGTACAGGCCGGACGTGGACTGCTA
LOC_Os01g64450
Os.36345.1.S1_at--452--8531Chr01:37733330..37733354 (25 bp)
TGGACTGCTACATCAGGGTGCCCGA
LOC_Os01g64450
Os.36345.1.S1_at--515--3991Chr01:37733256..37733280 (25 bp)
CGTGTCGACGACTTCATGTGATGGA
LOC_Os01g64450
Os.36345.1.S1_at--206--9631Chr01:37733243..37733267 (25 bp)
TCATGTGATGGACTGGACCCTGAAG
LOC_Os01g64450
Os.36345.1.S1_at--974--5811Chr01:37733228..37733252 (25 bp)
GACCCTGAAGGGTGCAGCATTGCAT
LOC_Os01g64450
Os.36345.1.S1_at--274--10731Chr01:37733209..37733233 (25 bp)
TTGCATTGCACGTATAGGTGACTTC
LOC_Os01g64450
Os.36345.1.S1_at--286--6891Chr01:37733170..37733194 (25 bp)
GTATATTATGATCTTCGAGACAGCA
LOC_Os01g64450
Os.36345.1.S1_at--492--2311Chr01:37733111..37733135 (25 bp)
AAAGGAAGTTTGATCGTCCATGACG
NONE
Target Sequence 
AAGAGCACGATGGTGATCCGGCCGAGCTTCGTCGGGCAGGGCGTCCTCGCCGGCGCGGCGGCGTTCGGAAGGGAGAAGGA
GGAAGGGTTCTTCAACATCAACGTGAAGCTCCACATGAGGGTGCGTCTCAAGGTGATGGTCTTCGTGGACAGCGTCGAGT
ACAGGCCGGACGTGGACTGCTACATCAGGGTGCCCGACCCGAGCAACGCGACGGCGGTGGCGATGGGGTTCACGGCGACG
CGCTGCCGTGTCGACGACTTCATGTGATGGACTGGACCCTGAAGGGTGCAGCATTGCATTGCACGTATAGGTGACTTCAG
ATTGTTCATTGTGTATATTATGATCTTCGAGACAGCAAAAGGAAGTTTTTCTTTTCAAACGAATTGAATCAAAAGGAAGT
TTGATCGTCCATGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis