Browse Element(s) Details


Os.36706.1.S1_at

Description gb:AK062845.1
DB_XREF= gi:32972863
TID=Os.36706.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 1, F8A12.12 (OJ1793_E11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H09, full insert sequence.
FL= gb:AK062845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g336602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33630Os.8407.1.S1_at10/117+20085461..20091562potyviral helper component protease-interacting protein 2, putative, expressed
LOC_Os07g33640NANA7+20096291..20097106hypothetical protein
LOC_Os07g33650Os.10455.1.S1_at11/117+20105113..20108087expressed protein
LOC_Os07g33660Os.36706.1.S1_at2/117+20111898..20113159expressed protein
LOC_Os07g33670Os.24572.1.S1_at6/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.21802.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33670OsAffx.18355.1.S1_at1/117+20113836..20121270patatin family protein, putative, expressed
LOC_Os07g33680Os.23201.1.S1_at11/117+20125344..20127139succinate dehydrogenase subunit 3, putative, expressed
LOC_Os07g33690Os.57049.1.S1_at11/117+20127954..20133545NB-ARC domain containing protein, expressed
LOC_Os07g33700Os.35344.3.S1_x_at10/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700Os.35344.18.S1_x_at9/117+20134667..20140527transposon protein, putative, Mutator sub-class
LOC_Os07g33700OsAffx.22940.5.S1_x_at3/117+20134667..20140527transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36706.1.S1_at--171--5771NONE
GACGTCGAGCAGTACTTCAACTACA
NONE
Os.36706.1.S1_at--992--8971Chr07:20112963..20112987 (25 bp)
TGAACCAGGACATCCACCCGGTGGA
LOC_Os07g33660
Os.36706.1.S1_at--420--5791Chr07:20113109..20113133 (25 bp)
GACGACACCAGGGAGTTCATCCTCG
LOC_Os07g33660
Os.36706.1.S1_at--326--4091Chr07:20113179..20113203 (25 bp)
CGACGACCTTGATGCCTGGATATGT
NONE
Os.36706.1.S1_at--230--4471Chr07:20113192..20113216 (25 bp)
GCCTGGATATGTTTCGGCTATACTA
NONE
Os.36706.1.S1_at--110--5211Chr07:20113288..20113312 (25 bp)
GAGTTTAGCCGGGAAATTCACAAGT
NONE
Os.36706.1.S1_at--1106--6952Chr07:20113333..20113357 (25 bp)
GTAGCTTCATCTGTATCTTTCACTT
NONE
Os.36706.1.S1_at--989--431Chr07:20113347..20113371 (25 bp)
ATCTTTCACTTTCTTCGCTGTGTGA
NONE
Os.36706.1.S1_at--1099--10631Chr07:20113360..20113384 (25 bp)
TTCGCTGTGTGAGGCTATGCTTTGT
NONE
Os.36706.1.S1_at--619--1191Chr07:20113401..20113425 (25 bp)
AGTAGTATCTTCCACTGTTTCAATA
NONE
Os.36706.1.S1_at--166--5211Chr07:20113464..20113488 (25 bp)
GAATTGGAAGCTTTGATGTTCACAT
NONE
Target Sequence 
GACGTCGAGCAGTACTTCAACTACATGGGGATGCTGGCGGTGGAGGGCACCTACGACAAGATGGAGGCGCTGCTGAACCA
GGACATCCACCCGGTGGACATCCTCCTCATGCTCGCCGCCTCCGAGGGCGACAAGCCCAAGCTCGAGGAGCTCCTCCGCG
CCGGCGCCAAGTACGACGTCAAGGACGTCGACGGCCGGACGGCGCTCGACCGCGCCGCCGACGACACCAGGGAGTTCATC
CTCGGCTTCGCCGCCACCTTGGCCGCCTGATCGATCGCTTCGCCNACGACGACGACCTTGATGCCTGGATATGTTTCGGC
TATACTAGTATNACTACGTATTTATCTTTTCTNNTTTTTTNTCTTTTTCAAGTTTCTCCAAGTTTTTCTTGTGTTTGGTA
GAGTTTAGCCGGGAAATTCACAAGTTGTTTACAGTTCAAGAGGAAGTAGCTTCATCTGTATCTTTCACTTTCTTCGCTGT
GTGAGGCTATGCTTTGTAGAAATTGTTGTTACAAGTAGTATCTTCCACTGTTTCAATATGAAAGTAAGAAGAAGCTTTGG
ATGCATGATACTATTGGAATTGGAAGCTTTGATGTTCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis