Browse Element(s) Details


Os.36711.1.S1_at

Description gb:AK062833.1
DB_XREF= gi:32972851
TID=Os.36711.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-G09, full insert sequence.
FL= gb:AK062833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3899011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38930OsAffx.5572.1.S1_at10/117+23342395..23346718Glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g38940Os.57174.1.S1_at11/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38940OsAffx.16621.1.S1_at10/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38950Os.18307.1.S1_at11/117+23351259..23353084expressed protein
LOC_Os07g38960Os.37713.1.S1_at11/117+23356083..23357999Chlorophyll a-b binding protein 7, chloroplast precursor, putative, expressed
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein
LOC_Os07g39000OsAffx.16622.1.S1_at2/117+23376944..23379350expressed protein
LOC_Os07g39000Os.27237.3.A1_x_at1/117+23376944..23379350expressed protein
LOC_Os07g39010Os.48332.1.A1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_s_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.11693.1.S1_at11/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.1.S1_x_at4/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010Os.23259.1.S1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.2609.2.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39010OsAffx.9194.3.A1_at1/117+23387704..23395217lactose permease, putative, expressed
LOC_Os07g39020Os.47325.1.S1_at11/117+23396515..23398959Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36711.1.S1_at--793--9431Chr07:23371997..23372017 (21 bp)
TCGGGTCCGCTTCGATCCAGGAATG
LOC_Os07g38990
Os.36711.1.S1_at--956--571Chr07:23371831..23371852 (22 bp)
ATCCAGGAATGCGTCGAGCTCGGAC
LOC_Os07g38990
Os.36711.1.S1_at--589--5111Chr07:23371747..23371771 (25 bp)
GCACTCGAGGGTTCGCCTACTGAAA
LOC_Os07g38990
Os.36711.1.S1_at--676--1471Chr07:23370686..23370708 (23 bp)
AGAATGATTTCCTCAGCCAACTGCA
LOC_Os07g38990
Os.36711.1.S1_at--583--1691Chr07:23370218..23370694 (25 bp)
AGCCAACTGCAAATGACCCTCATAA
LOC_Os07g38990
Os.36711.1.S1_at--336--4972Chr07:23381604..23381628 (25 bp)
GCATCATCCAACAGGGCTCGAATCA
NONE
Os.36711.1.S1_at--993--5231Chr07:23370129..23370153 (25 bp)
GAATCATGTTGTGCACGTGGTCCTT
LOC_Os07g38990
Os.36711.1.S1_at--834--1911Chr07:23370115..23370139 (25 bp)
ACGTGGTCCTTTTTGCTCTGTTTTG
LOC_Os07g38990
Os.36711.1.S1_at--160--6812Chr07:23381552..23381576 (25 bp)
GTTTTGCTTCTTCGTTGTCTATCTC
NONE
Os.36711.1.S1_at--840--7152Chr07:23381536..23381560 (25 bp)
GTCTATCTCTTGTCAAAGTTCTCTA
NONE
Os.36711.1.S1_at--335--6071Chr07:23370014..23370038 (25 bp)
GAGTTCTGTCAACCTAGTGACCATG
LOC_Os07g38990
Target Sequence 
TCGGGTCCGCTTCGATCCAGGAATGCGTCGAGCTCGGACGAGATCCAGCTGCGGATCGATCCGGTGCACGGCGATCTTGA
TGAGGAGATCGATGGGCTGCACTCGAGGGTTCGCCTACTGAAAGGCGTGGCCCAGGAGATAAATGCTGAAGCCAAGTTCC
AGAATGATTTCCTCAGCCAACTGCAAATGACCCTCATAAAAGCTCAGGCTGGAGTGAAGCATAACATGCGAAGGATGAAC
AAGAGCATCATCCAACAGGGCTCGAATCATGTTGTGCACGTGGTCCTTTTTGCTCTGTTTTGCTTCTTCGTTGTCTATCT
CTTGTCAAAGTTCTCTAGAAGATAATAACACTGTTAGACATATGGCTATAAGATAGTTGAGTTCTGTCAACCTAGTGACC
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis