Browse Element(s) Details


Os.37032.1.S1_a_at

Description gb:AK061242.1
DB_XREF= gi:32971260
TID=Os.37032.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SCARECROW protein (OJ1092_A07.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D01, full insert sequence.
FL= gb:AK061242.1 gb:AK059008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3803011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37960OsAffx.22483.1.S1_at11/117+22778414..22781911exostosin family protein, putative, expressed
LOC_Os07g37970OsAffx.16605.1.S1_at11/117+22783473..22785671Cytochrome P450 51, putative
LOC_Os07g37980OsAffx.28806.1.S1_at11/117+22787237..22789492Cytochrome P450 51, putative
LOC_Os07g37990Os.10954.1.S1_at11/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g37990Os.18186.1.S1_at1/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g38000Os.37602.2.S1_x_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38000Os.37602.1.S1_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein
LOC_Os07g38060Os.33891.1.S1_at11/117+22815501..22820481expressed protein
LOC_Os07g38070Os.27184.1.S1_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38070Os.44458.1.A1_x_at11/117+22825252..22829829Nodulation receptor kinase precursor, putative, expressed
LOC_Os07g38080Os.35731.1.S1_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.3.S1_x_at11/117+22830169..22835541expressed protein
LOC_Os07g38080Os.35731.2.S1_x_at4/117+22830169..22835541expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008356biological_processasymmetric cell division
GO:0009630biological_processgravitropism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37032.1.S1_a_at--572--9251Chr07:22807129..22807153 (25 bp)
TCCTCGGCGCGGAGATACGGAACAT
LOC_Os07g38030
Os.37032.1.S1_a_at--614--6211Chr07:22807271..22807295 (25 bp)
GAGGCTGCTTCTTGGCATGTACCCA
LOC_Os07g38030
Os.37032.1.S1_a_at--353--831Chr07:22807295..22807319 (25 bp)
ATGGAAGGGCTACACTCTCGTCGAA
LOC_Os07g38030
Os.37032.1.S1_a_at--741--6471Chr07:22807425..22807449 (25 bp)
GATACCCACCATGAGAGCCACGATT
LOC_Os07g38030
Os.37032.1.S1_a_at--5--5871Chr07:22807439..22807463 (25 bp)
GAGCCACGATTCTTGATCACATGAT
LOC_Os07g38030
Os.37032.1.S1_a_at--168--391Chr07:22807454..22807478 (25 bp)
ATCACATGATCGCAGTAGCAGCCAG
LOC_Os07g38030
Os.37032.1.S1_a_at--594--1031Chr07:22807477..22807501 (25 bp)
AGGTCGATTCACCTGTCGCAGCTTT
LOC_Os07g38030
Os.37032.1.S1_a_at--926--7131Chr07:22807507..22807531 (25 bp)
GTCATATTCATTATCCTCTTTCTGC
LOC_Os07g38030
Os.37032.1.S1_a_at--1018--151Chr07:22807516..22807540 (25 bp)
ATTATCCTCTTTCTGCTAGCTACTT
LOC_Os07g38030
Os.37032.1.S1_a_at--625--10011Chr07:22807532..22807556 (25 bp)
TAGCTACTTCATTCGATCGTTCTTC
LOC_Os07g38030
Os.37032.1.S1_a_at--666--6731Chr07:22807550..22807574 (25 bp)
GTTCTTCCTCCTGTGAGTAGTATTT
LOC_Os07g38030
Target Sequence 
TCCTCGGCGCGGAGATACGGAACATCGTCGCCGTCGGGGGCCCCAAGCGCACCGGCGAGGTGCGCGTCGAGCGGTGGGGC
GACGAGCTGCGGCGAGCGGGGTTCCGGCCGGTGACCCTGGCCGGCAGCCCCGCCGCGCAGGCGAGGCTGCTTCTTGGCAT
GTACCCATGGAAGGGCTACACTCTCGTCGAAGAGGACGGCTGCCTCAAGCTCGGGTGGAAGGACCTGTCCCTGCTCACCG
CCTCGTCGTGGGAGCCGACAGACGGCGACGCCGACGCCGACGTCGCCGTCGCCGGCGATACCCACCATGAGAGCCACGAT
TCTTGATCACATGATCGCAGTAGCAGCCAGGTCGATTCACCTGTCGCAGCTTTTCTTGGTCATATTCATTATCCTCTTTC
TGCTAGCTACTTCATTCGATCGTTCTTCCTCCTGTGAGTAGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37032.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis