Browse Element(s) Details


Os.37062.1.S1_at

Description gb:AK061076.1
DB_XREF= gi:32971094
TID=Os.37062.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 1, P0043B10.18 (OJ1123_G09.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-E03, full insert sequence.
FL= gb:AK061076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2928011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29240Os.34410.1.S1_at11/111+16719170..16720248expressed protein
LOC_Os01g29250NANA1+16721546..16724631retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g29260Os.25754.2.S1_x_at3/111+16727495..16730459retrotransposon protein, putative, unclassified
LOC_Os01g29270OsAffx.20387.1.S1_x_at2/111+16734636..16740234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29280Os.37062.1.S1_at11/111+16741909..16742875expressed protein
LOC_Os01g29280Os.37062.2.S1_x_at8/111+16741909..16742875expressed protein
LOC_Os01g29290OsAffx.9772.1.S1_at11/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_at3/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.12169.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.13774.1.S1_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29300OsAffx.23445.1.S1_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29300OsAffx.23445.1.S1_x_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29310NANA1+16751209..16752267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29320OsAffx.3903.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30891.1.S1_x_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30350.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29330Os.23606.1.S1_at11/111+16762724..16763708expressed protein
LOC_Os01g29340NANA1+16764361..16768996retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37062.1.S1_at--972--4231Chr01:16742675..16742699 (25 bp)
CCGTCCGGCGCCAGAAACGAACAAG
LOC_Os01g29280
Os.37062.1.S1_at--1004--4551Chr01:16742682..16742706 (25 bp)
GCGCCAGAAACGAACAAGCCTACAC
LOC_Os01g29280
Os.37062.1.S1_at--1011--2651Chr01:16742697..16742721 (25 bp)
AAGCCTACACAAGTTTCAGATCACA
LOC_Os01g29280
Os.37062.1.S1_at--1150--10511Chr01:16742711..16742735 (25 bp)
TTCAGATCACATGCCATAGGACCAT
LOC_Os01g29280
Os.37062.1.S1_at--809--4431Chr01:16742723..16742747 (25 bp)
GCCATAGGACCATTATACTTACACT
LOC_Os01g29280
Os.37062.1.S1_at--761--6871Chr01:16742748..16742772 (25 bp)
GTATTACAGTATTGCTAACTGCTAA
LOC_Os01g29280
Os.37062.1.S1_at--492--3131Chr01:16742771..16742795 (25 bp)
AATTTAGTTTGCATATTAGCGAGAT
LOC_Os01g29280
Os.37062.1.S1_at--496--6611Chr01:16742793..16742817 (25 bp)
GATTGGAGGTGCTTGAAGGACACAA
LOC_Os01g29280
Os.37062.1.S1_at--328--8151Chr01:16742810..16742834 (25 bp)
GGACACAATGCTAATTCCTCCGTTC
LOC_Os01g29280
Os.37062.1.S1_at--881--4832Chr06:27612015..27612034 (20 bp)
GCTAATTCCTCCGTTCAATTTATTG
NONE
Os.37062.1.S1_at--944--2231Chr01:16742851..16742875 (25 bp)
AAATTATTACTGTTTGACGTACATT
LOC_Os01g29280
Target Sequence 
CCGTCCGGCGCCAGAAACGAACAAGCCTACACAAGTTTCAGATCACATGCCATAGGACCATTATACTTACACTGTATTAC
AGTATTGCTAACTGCTAATTTAGTTTGCATATTAGCGAGATTGGAGGTGCTTGAAGGACACAATGCTAATTCCTCCGTTC
AATTTATTGTCGAGTAAAATTATTACTGTTTGACGTACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis