Browse Element(s) Details


Os.37225.1.S1_at

Description gb:AK059964.1
DB_XREF= gi:32969982
TID=Os.37225.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F08, full insert sequence.
FL= gb:AK059964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2781010/11fiber protein Fb34, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27760Os.23200.2.S1_x_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.2.S1_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.1.S1_x_at3/117+16195086..16204224expressed protein
LOC_Os07g27770OsAffx.28632.1.S1_at4/117+16205480..16207506transposon protein, putative, unclassified
LOC_Os07g27780Os.49082.1.S1_at9/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27780OsAffx.14529.1.S1_x_at1/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27790Os.12568.2.S1_at11/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27790Os.12568.1.S1_x_at9/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27800OsAffx.28632.1.S1_at11/117+16218413..16222270transposon protein, putative, unclassified
LOC_Os07g27810Os.37225.1.S1_at10/117+16224811..16228973fiber protein Fb34, putative, expressed
LOC_Os07g27810OsAffx.25952.1.S1_s_at2/117+16224811..16228973fiber protein Fb34, putative, expressed
LOC_Os07g27820OsAffx.20354.1.S1_at3/117+16233830..16236759retrotransposon protein, putative, unclassified
LOC_Os07g27834Os.46610.1.A1_x_at2/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.3347.1.S1_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.27810.1.S1_x_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37225.1.S1_at--896--10631NONE
TTCGCATGGTTGACCTTCCTCATTG
NONE
Os.37225.1.S1_at--749--6191Chr07:16225455..16225479 (25 bp)
GAGGCATGCTTGATGGCCGGATCCA
LOC_Os07g27810
Os.37225.1.S1_at--618--7971Chr07:16225437..16225461 (25 bp)
GGATCCATCCGGAATGCGTACCACA
LOC_Os07g27810
Os.37225.1.S1_at--733--3531Chr07:16225315..16225339 (25 bp)
CATCCTCAGCGAATTCTACTACGTT
LOC_Os07g27810
Os.37225.1.S1_at--420--4831Chr07:16225301..16225325 (25 bp)
TCTACTACGTTAGCTACTCCAAGTC
LOC_Os07g27810
Os.37225.1.S1_at--1156--11Chr07:16225236..16225260 (25 bp)
ATTGGCATGGGCACTTACAGCTAAA
LOC_Os07g27810
Os.37225.1.S1_at--622--3991Chr07:16225147..16225171 (25 bp)
CGTGGAGTGCATTGTTCTTGTTAAC
LOC_Os07g27810
Os.37225.1.S1_at--436--6771Chr07:16225090..16225114 (25 bp)
GTTTACTATCCCGTTAGGTTGTATG
LOC_Os07g27810
Os.37225.1.S1_at--610--7791Chr07:16225056..16225080 (25 bp)
GGTTGGGTTGTACACTATTCGGATT
LOC_Os07g27810
Os.37225.1.S1_at--276--711Chr07:16224991..16225015 (25 bp)
ATGATGATGCGCTATTGCCTGCTGA
LOC_Os07g27810
Os.37225.1.S1_at--247--5671Chr07:16224968..16224992 (25 bp)
GACATGGTCATCTCTCTTGCTTGAT
LOC_Os07g27810
Target Sequence 
TTCGCATGGTTGACCTTCCTCATTGCTGAGGCATGCTTGATGGCCGGATCCATCCGGAATGCGTACCACACCCGGTACAG
GGGGATGTTCGTTGGCGAGTCCGTCTCCTGCGAGACTGTGCGCAAAGGTGTCTTTGCTGCTGGTGCGGCCTTCACCTTCT
TCACAGCCATCCTCAGCGAATTCTACTACGTTAGCTACTCCAAGTCCCGCGATGCTGCTGGGGGTGCCCCGTACGGTGGC
TCCAACATTGGCATGGGCACTTACAGCTAAAAGGAGCTTGCTGAACAGGATGANCCGGTCCTTGAGCTTGTTGGATTCAA
GGTGGAGCATGTGNTCGTGGAGTGCATTGTTCTTGTTAACACATTACCTTAGTTACGGTGTAATTGGTTGGGGTTTACTA
TCCCGTTAGGTTGTATGAGATTACTTGGTTGGGTTGTACACTATTCGGATTATTGGATTGGATTCTGAACATGGAATACA
CGTATCCTAGTATGATGATGCGCTATTGCCTGCTGACATGGTCATCTCTCTTGCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis