Browse Element(s) Details


Os.37403.1.S1_at

Description gb:AK058757.1
DB_XREF= gi:32968775
TID=Os.37403.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0054L14.15 (OSJNBa0054L14.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B04, full insert sequence.
FL= gb:AK058757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3289010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed
LOC_Os01g32890Os.37403.1.S1_at10/111+18389098..18390821expressed protein
LOC_Os01g32900OsAffx.11290.1.S1_at11/111+18391718..18392649hypothetical protein
LOC_Os01g32910OsAffx.11291.1.S1_at11/111+18395653..18396183hypothetical protein
LOC_Os01g32920OsAffx.11292.1.S1_at11/111+18400425..18401153hypothetical protein
LOC_Os01g32930OsAffx.23479.1.S1_at11/111+18404310..18405031SGS domain containing protein, expressed
LOC_Os01g32940Os.11380.1.S1_x_at1/111+18406274..18407146hypothetical protein
LOC_Os01g32950OsAffx.23481.1.S1_at11/111+18407869..18408138hypothetical protein
LOC_Os01g32964Os.37337.1.S1_a_at10/111+18414449..18422030Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37403.1.S1_at--724--1351Chr01:18389639..18389663 (25 bp)
AGAGATGAGCAGAGCTCCCTTGCCA
LOC_Os01g32890
Os.37403.1.S1_at--520--691Chr01:18389587..18389611 (25 bp)
ATGAGAAGTCTTTGGCCAGGGACGA
LOC_Os01g32890
Os.37403.1.S1_at--1006--5131Chr01:18389515..18389539 (25 bp)
GCAAACAGTTTCCATTGCTCGCAAA
LOC_Os01g32890
Os.37403.1.S1_at--661--6131Chr01:18389471..18389495 (25 bp)
GAGGGACAACCTGCTATCATGGAAT
LOC_Os01g32890
Os.37403.1.S1_at--482--5191Chr01:18389450..18389474 (25 bp)
GAATTGTTCCCTAGGTTGGACGGCG
LOC_Os01g32890
Os.37403.1.S1_at--1103--7611Chr01:18389328..18389352 (25 bp)
GGGACTAATTTACAAGCTCGAAGGA
LOC_Os01g32890
Os.37403.1.S1_at--754--4771Chr01:18389303..18389327 (25 bp)
GCTGCGATCCTAGCTGATGGTAATA
LOC_Os01g32890
Os.37403.1.S1_at--1102--7811NONE
GGTAATATGATCCACTAGTCTCCCC
NONE
Os.37403.1.S1_at--347--9391Chr01:18389260..18389284 (25 bp)
TCGTCATCTTCGGTTCCATAGTTAA
LOC_Os01g32890
Os.37403.1.S1_at--1001--151Chr01:18389179..18389203 (25 bp)
ATTATGTCCTTTTGGTGGTTTGATA
LOC_Os01g32890
Os.37403.1.S1_at--798--5131Chr01:18389133..18389157 (25 bp)
GCAAAATCCTGCTGACATTCTAAGT
LOC_Os01g32890
Target Sequence 
AGAGATGAGCAGAGCTCCCTTGCCAGGGATGAGCAGAAGTCTTTCGCCAGGGATGAGAAGTCTTTGGCCAGGGACGAGGA
GAAGTCCTTAGCTAGTGATGAGCAGAGGTCATTCGATGATATGTGCAAACAGTTTCCATTGCTCGCAAAGGAAATTAAGG
TGCTCATGGAGGGACAACCTGCTATCATGGAATTGTTCCCTAGGTTGGACGGCGACCAAGTTGTCGCAATTGAGAAAAAG
TTGGAGAACCTGAGGTGGATTGATATGAAGAGGAAGAAAAAGATGGCAGTTAAGATGGCCAAGATTAGAAAGGGACTAAT
TTACAAGCTCGAAGGAGCTGCGATCCTAGCTGATGGTAATATGATCCACTAGTCTCCCCTCGTCATCTTCGGTTCCATAG
TTAAGTATCAGTTAGCTCTATACTCTATAGGTTAATTAGTAGTGTCCTTTTGTGATGGTAATTATGTCCTTTTGGTGGTT
TGATAGTGAATAGATTGGGCAAGTATGCAAAATCCTGCTGACATTCTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis