Browse Element(s) Details


Os.3749.1.S1_at

Description gb:AK121276.1
DB_XREF= gi:37990899
TID=Os.3749.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107H23, full insert sequence.
FL= gb:AK121276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g122703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12250Os.36177.1.S1_at10/111+6690832..6693597expressed protein
LOC_Os01g12260Os.3748.1.S1_at9/111+6696264..6700173Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g12270Os.3749.1.S1_at3/111+6701205..6701468expressed protein
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3749.1.S1_at--43--2951Chr01:6701363..6701387 (25 bp)
AAGGCGGCGAACAAGGAGCCCATCA
LOC_Os01g12270
Os.3749.1.S1_at--427--3211Chr01:6701304..6701328 (25 bp)
CAAGGAGAGCCTGAGCCGCCATGAG
LOC_Os01g12270
Os.3749.1.S1_at--830--2691Chr01:6701252..6701276 (25 bp)
AAGCTCGACGCGCTCTGCCAGGAGT
LOC_Os01g12270
Os.3749.1.S1_at--492--1951Chr01:6701104..6701128 (25 bp)
ACTGTGTTGTTCATGGCTGAGTAAA
NONE
Os.3749.1.S1_at--33--10191Chr01:6701075..6701099 (25 bp)
TATACTTCCTACAAGCGGCTGTGAT
NONE
Os.3749.1.S1_at--285--791Chr01:6701046..6701070 (25 bp)
ATGTGAGCTGCTTTAGCTGACGCGT
NONE
Os.3749.1.S1_at--642--10451Chr01:6701034..6701058 (25 bp)
TTAGCTGACGCGTTCATCTTTGGAC
NONE
Os.3749.1.S1_at--1147--3551Chr01:6700959..6700983 (25 bp)
CATAGCCATCTGTTTGCGTTGAAGT
NONE
Os.3749.1.S1_at--1104--5331Chr01:6700939..6700963 (25 bp)
GAAGTTTGGTTTGATTCTCACTTGT
NONE
Os.3749.1.S1_at--944--7051Chr01:6700901..6700925 (25 bp)
GTAACCTTAGGATGTTTGCGAACGA
NONE
Os.3749.1.S1_at--1031--10111Chr01:6700818..6700842 (25 bp)
TATGTATTACCCCTCTATTCTAAAA
NONE
Target Sequence 
AAGGCGGCGAACAAGGAGCCCATCAGCCCGGGCTCGCCGTCCCTGGCGAGCGGCGCCGGCAAGGAGAGCCTGAGCCGCCA
TGAGGCCGCCGTCGTGTCCCTGCCCGCGTGGAAGCTCGACGCGCTCTGCCAGGAGTCCGGCTCGTCGCCGGCGGTGATGA
GGGCGCGCTTCCCCTACTTCTGAATTTCTGAATTTCTGATGAAGCCATGAGCTTTTTGCCATCTTCGTACGTGTGTGTGT
GTGTGTGTGTGTGATTGTAACTGTGTTGTTCATGGCTGAGTAAAGAATTATACTTCCTACAAGCGGCTGTGATGTATATG
TGAGCTGCTTTAGCTGACGCGTTCATCTTTGGACGCTGTAAAAACTAAAAACTGCCAGTTTTTCATGTAGCATCATTGGA
AAAACATAGCCATCTGTTTGCGTTGAAGTTTGGTTTGATTCTCACTTGTGGGCATGTGNTTGGTAACCTTAGGATGTTTG
CGAACGATGTGCACTGATATATGTGTAACCCAAATTACATAGGAGTGGTTTGTTTTGTAAAAAAATATGTATTACCCCTC
TATTCTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis