Browse Element(s) Details


Os.37731.1.S1_at

Description gb:AK100619.1
DB_XREF= gi:32985828
TID=Os.37731.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0091J19.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108E24, full insert sequence.
FL= gb:AK100619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5683010/11AFR615Wp, putative, expressed
LOC_Os06g263301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56783NANA3+32295958..32296807hypothetical protein
LOC_Os03g56784NANA3+32298320..32298708hypothetical protein
LOC_Os03g56790Os.2813.1.S1_at11/113+32299508..32302773Actin-depolymerizing factor 6, putative, expressed
LOC_Os03g56800Os.4738.2.S1_x_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56800Os.4738.1.S1_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56810Os.10894.1.S1_s_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56810Os.10894.1.S1_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed
LOC_Os03g56830Os.37731.2.S1_at11/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56830Os.37731.1.S1_at10/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed
LOC_Os03g56850OsAffx.25739.1.S1_at11/113+32328006..32331156pentatricopeptide, putative
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37731.1.S1_at--121--3491Chr03:32319376..32319400 (25 bp)
CAGGCCAAAGGCGTTCCAGGCAAAA
LOC_Os03g56830
Os.37731.1.S1_at--1007--931Chr03:32319359..32319383 (25 bp)
AGGCAAAAATGCTTCCGCGCTGGAC
LOC_Os03g56830
Os.37731.1.S1_at--750--4251Chr03:32319303..32319327 (25 bp)
CCGTGGCTGAGACCGGCAGCAATTA
LOC_Os03g56830
Os.37731.1.S1_at--78--4391NONE
GCCCAATTCCCGGAGTTTCGTCAAG
NONE
Os.37731.1.S1_at--541--6591Chr03:32319178..32319202 (25 bp)
GATTGGCCGGAGAAGTCGTACCCCA
LOC_Os03g56830
Os.37731.1.S1_at--346--7771Chr03:32319105..32319129 (25 bp)
GGTGAACCATCGCTAAGGGCTATCT
LOC_Os03g56830
Os.37731.1.S1_at--1081--1037Chr06:15412244..15412283 (25 bp)
AGGTGTGAGGCCCTTCGCCTTTTAG
LOC_Os06g26330
Os.37731.1.S1_at--927--10331Chr03:32318950..32318974 (25 bp)
TTTAGCCTCCTTGTATCTAGGGCAG
LOC_Os03g56830
Os.37731.1.S1_at--166--5071Chr03:32318929..32318953 (25 bp)
GCAGCTTTCGTAGTGTGGGCTTCGC
LOC_Os03g56830
Os.37731.1.S1_at--934--8631Chr03:32318914..32318938 (25 bp)
TGGGCTTCGCCCTTTTGCAATGTAG
LOC_Os03g56830
Os.37731.1.S1_at--963--1691Chr03:32318891..32318915 (25 bp)
AGCCAAATGCGGGACACTTGTGTTT
LOC_Os03g56830
Target Sequence 
CAGGCCAAAGGCGTTCCAGGCAAAAATGCTTCCGCGCTGGACTTCTCGGAATGGACACAACAAGCCGGAGGTGCCGTGGC
TGAGACCGGCAGCAATTATGGTGATTGTTGTGCTCGGGTTTCGGCGGCTTTCGTGCTTGGGGTGCTCCAGGAAAATGGGT
GCGAACATGTCGCCCAATTCCCGGAGTTTCGTCAAGGGAGATTGGCCGGAGAAGTCGTACCCCATCTCTACTACTCTTCG
CGCTTGGCGAAAAGAGTACTGGCAGAAGGAGGGGTGAACCATCGCTAAGGGCTATCTCCGCGACCAACTGGAGAAGAGCG
CGAAGGCTCAACGCGAAGCGGAAGAAGCCGCGGAGGAGCCCAAAGCTGGCGACGGTGAAGCTGACGCAGCTGGCCCAGAT
CACCCAGAGGTGTGAGGCCCTTCGCCTTTTAGCCTCCTTGTATCTAGGGCAGCTTTCGTAGTGTGGGCTTCGCCCTTTTG
CAATGTAGCCAAATGCGGGACACTTGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis