Browse Element(s) Details


Os.37849.1.A1_s_at

Description gb:AK068289.1
DB_XREF= gi:32978307
TID=Os.37849.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=25
UG=Os.37849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147E18, full insert sequence.
FL= gb:AK068289.1 gb:AK060883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0278011/11XYPPX repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02710NANA5+952049..953330transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g02720OsAffx.26698.1.S1_at11/115+953564..954816hypothetical protein
LOC_Os05g02730NANA5+955957..956777Homeobox domain containing protein
LOC_Os05g02740OsAffx.26699.1.S1_s_at11/115+965458..966245hypothetical protein
LOC_Os05g02740OsAffx.26699.1.S1_at8/115+965458..966245hypothetical protein
LOC_Os05g02750Os.18539.1.S1_at11/115+967650..968788expressed protein
LOC_Os05g02760OsAffx.14511.1.S1_at11/115+969464..972158expressed protein
LOC_Os05g02770Os.7381.1.S1_at10/115+975566..977383expressed protein
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02790OsAffx.14512.1.S1_at11/115+982594..985698kinase interacting protein, putative, expressed
LOC_Os05g02799NANA5+986759..986988NA
LOC_Os05g02810Os.57055.1.S1_at11/115+988676..990898zinc finger family protein, putative, expressed
LOC_Os05g02820Os.23158.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02820Os.3887.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02840OsAffx.14514.1.S1_at11/115+1003784..1005697hypothetical protein
LOC_Os05g02840Os.8881.1.S1_at10/115+1003784..1005697hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37849.1.A1_s_at--296--7611Chr05:979024..979048 (25 bp)
GGGCACACAAGATCTCTTCTCATGG
LOC_Os05g02780
Os.37849.1.A1_s_at--35--4891Chr05:978964..978988 (25 bp)
GCTTTGGTGGTTACGGCCATGGCTA
LOC_Os05g02780
Os.37849.1.A1_s_at--229--3931Chr05:978900..978924 (25 bp)
CGGCCACCATGGCAAGTTCAAGCAT
LOC_Os05g02780
Os.37849.1.A1_s_at--141--8171Chr05:978800..978824 (25 bp)
GGAACTCTGTTTAGGCTTTAACTGA
LOC_Os05g02780
Os.37849.1.A1_s_at--861--8291Chr05:978787..978811 (25 bp)
GGCTTTAACTGAAGTGCTTGCGCTT
LOC_Os05g02780
Os.37849.1.A1_s_at--191--1131Chr05:978775..978799 (25 bp)
AGTGCTTGCGCTTGGCTGGTTAAAA
LOC_Os05g02780
Os.37849.1.A1_s_at--875--2651Chr05:978741..978765 (25 bp)
AAGCCTCTCGAATGTATCTAAGCAG
LOC_Os05g02780
Os.37849.1.A1_s_at--956--5911Chr05:978712..978736 (25 bp)
GAGCTTTGCTCAGTTGCTGCTCCCA
LOC_Os05g02780
Os.37849.1.A1_s_at--637--9231Chr05:978687..978711 (25 bp)
TCCTTCCTCTATGATTTGGTACTCT
LOC_Os05g02780
Os.37849.1.A1_s_at--89--7851Chr05:978670..978694 (25 bp)
GGTACTCTAGTATGTGGCTCAGTGA
LOC_Os05g02780
Os.37849.1.A1_s_at--784--3751Chr05:978653..978677 (25 bp)
CTCAGTGACAATATGGCTTGCTAAT
LOC_Os05g02780
Target Sequence 
GGGCACACAAGATCTCTTCTCATGGCCATGGTGGACACATGGGCTATGGAGGCCATGGAGGCTTTGGTGGTTACGGCCAT
GGCTACGGCGGTCACCACGGCGGCAAGTTCAAGCATGGCAAGCACGGCCACCATGGCAAGTTCAAGCATGGCAAGCATGG
GCACGGCATGTTCGGTGGTGGCAAGTTCAAGAAGTGGAAGTAATGCGCATGATCTGATCATGCTGGAACTCTGTTTAGGC
TTTAACTGAAGTGCTTGCGCTTGGCTGGTTAAAAGCCTAAAAAAAGCCTCTCGAATGTATCTAAGCAGGATGGAGCTTTG
CTCAGTTGCTGCTCCCATCCTTCCTCTATGATTTGGTACTCTAGTATGTGGCTCAGTGACAATATGGCTTGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37849.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis