Browse Element(s) Details


Os.37902.1.S1_at

Description gb:AK069631.1
DB_XREF= gi:32979655
TID=Os.37902.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025J18, full insert sequence.
FL= gb:AK069631.1 gb:AK105862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3025011/11Phytochelatin synthetase-like conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30200Os.7354.1.S1_at11/113+17191511..17196010Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g30210OsAffx.25377.3.S1_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.3.S1_x_at11/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_s_at8/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_at3/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.3.S1_s_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.1.S1_x_at2/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.24942.4.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210OsAffx.25377.2.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30210Os.45721.1.S1_x_at1/113+17197332..17198050hypothetical protein
LOC_Os03g30220OsAffx.25293.1.S1_at11/113+17203247..17204497Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30230OsAffx.3370.1.S1_at11/113+17208468..17209031Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30240OsAffx.25294.1.S1_at11/113+17213591..17214049hypothetical protein
LOC_Os03g30250Os.37902.1.S1_at11/113+17215334..17217366Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os03g30260Os.50763.1.S1_at11/113+17217308..17221476COBRA-like protein 2 precursor, putative, expressed
LOC_Os03g30264NANA3+17226272..17226922hypothetical protein
LOC_Os03g30270OsAffx.8319.1.S1_x_at2/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30270Os.12826.1.S1_at1/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30280OsAffx.13121.1.S1_at11/113+17233535..17234151hypothetical protein
LOC_Os03g30290NANA3+17239325..17242217expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009825biological_processmultidimensional cell growth
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0010215biological_processcellulose microfibril organization
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009897cellular_componentexternal side of plasma membrane
GO:0009930cellular_componentlongitudinal side of cell surface (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37902.1.S1_at--375--4031Chr03:17216883..17216907 (25 bp)
CGTTCCCGCGCAAGATCTACTTCAA
LOC_Os03g30250
Os.37902.1.S1_at--448--4791Chr03:17217019..17217043 (25 bp)
GCTCCTCCTGGTGGCATGATCAGAA
LOC_Os03g30250
Os.37902.1.S1_at--907--4871Chr03:17217058..17217082 (25 bp)
GCTTTGTCTTCTTGATAATTCCCAC
LOC_Os03g30250
Os.37902.1.S1_at--90--10651Chr03:17217076..17217100 (25 bp)
TTCCCACATGTTTGGAGAGCAGTGT
LOC_Os03g30250
Os.37902.1.S1_at--854--8591Chr03:17217115..17217139 (25 bp)
TGGTCTATTCATACTGGATATTCAG
LOC_Os03g30250
Os.37902.1.S1_at--1150--5591Chr03:17217174..17217198 (25 bp)
GAAATTGCCTGATAGATCTCCATAA
LOC_Os03g30250
Os.37902.1.S1_at--600--751Chr03:17217198..17217222 (25 bp)
ATGTACAACACAATCAGGCTGGAAG
LOC_Os03g30250
Os.37902.1.S1_at--685--8191Chr03:17217218..17217242 (25 bp)
GGAAGAGTTTTGGTCAGTCCCCAGT
LOC_Os03g30250
Os.37902.1.S1_at--841--4171Chr03:17217237..17217261 (25 bp)
CCCAGTTAGGCCAGCCCTGAGAAAT
LOC_Os03g30250
Os.37902.1.S1_at--1114--3071Chr03:17217259..17217283 (25 bp)
AATCACACCACAAACTTTTCTGCAA
LOC_Os03g30250
Os.37902.1.S1_at--590--5531Chr03:17217342..17217366 (25 bp)
GAAACAATTTCCACATTTACTGACC
LOC_Os03g30250
Target Sequence 
CGTTCCCGCGCAAGATCTACTTCAACGGCGACGAGTGCAAGATGCCGCCGCCGGACTCCTACCCCTACCTACCCAACTCC
GCTCCGATCGGGCCGCCGCGTTCCGTGGCCGCCGCCGCCTCGGCGATCTTGGTGGTGCTCCTCCTGGTGGCATGATCAGA
AAAATGTCCCCTTTTGCTTTGTCTTCTTGATAATTCCCACATGTTTGGAGAGCAGTGTAGGTAGGGGCATTTTGGTCTAT
TCATACTGGATATTCAGTCAAAGAGGAAATCTGTGATATTGTGTTAACTTTGAAATTGCCTGATAGATCTCCATAATGTA
CAACACAATCAGGCTGGAAGAGTTTTGGTCAGTCCCCAGTTAGGCCAGCCCTGAGAAATCACACCACAAACTTTTCTGCA
AATTNTGTTGTGACTACAAATATGTATGCAGGTATTGACCTTGAATTGAGAGGAAAAAAGAAACAATTTCCACATTTACT
GACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis