Browse Element(s) Details


Os.37926.1.S1_at

Description gb:AK121790.1
DB_XREF= gi:37991413
TID=Os.37926.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37926 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095A12, full insert sequence.
FL= gb:AK121790.1 gb:AK065004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0339010/11D111/G-patch domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03320Os.7539.1.S1_at10/113+1398131..1399309expressed protein
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37926.1.S1_at--200--4511Chr03:1426651..1426675 (25 bp)
GCCGTTCGGGTGTGACATGAAGCCA
LOC_Os03g03390
Os.37926.1.S1_at--848--7131Chr03:1426681..1426705 (25 bp)
GTCATATTAGGCTATTCGTGCTTCT
LOC_Os03g03390
Os.37926.1.S1_at--200--2051Chr03:1426798..1426822 (25 bp)
ACTTACGAACGGCTGAGATGCTAAT
LOC_Os03g03390
Os.37926.1.S1_at--300--7451Chr03:1426826..1426850 (25 bp)
GTGTACACTGTTGAGCACATTTGAT
LOC_Os03g03390
Os.37926.1.S1_at--717--171Chr03:1426849..1426873 (25 bp)
ATTTTCATCGTTCATTTCCCTACAG
LOC_Os03g03390
Os.37926.1.S1_at--330--6851Chr03:1426879..1426903 (25 bp)
GTTTGGCAGCCGGTTCTGAATACCA
LOC_Os03g03390
Os.37926.1.S1_at--813--1891Chr03:1426908..1426932 (25 bp)
ACGTCAATATTGTACCTTAGCTGGT
LOC_Os03g03390
Os.37926.1.S1_at--649--7751Chr03:1426930..1426954 (25 bp)
GGTGTATTAGCTGGTGTATCTTCAA
LOC_Os03g03390
Os.37926.1.S1_at--1046--2051Chr03:1426962..1426986 (25 bp)
ACTTCTGTTTGGAGCGTGTGGTATA
LOC_Os03g03390
Os.37926.1.S1_at--247--6871Chr03:1426999..1427023 (25 bp)
GTTTGTGCCAACGTTCAGAGGCGCT
LOC_Os03g03390
Os.37926.1.S1_at--785--3431Chr03:1427014..1427038 (25 bp)
CAGAGGCGCTCTACTTTTAGAACAT
NONE
Target Sequence 
GCCGTTCGGGTGTGACATGAAGCCATTGTGGTCATATTAGGCTATTCGTGCTTCTGATGAGTGTACGAAAGTACGGAGCA
CAGTATGCTCTGCGGTATAGATGTAAGAAGTAATACCCCTCACGCATGGGGGGTCAAATTTTGCAAAACTTACGAACGGC
TGAGATGCTAATTGTGTGTACACTGTTGAGCACATTTGATTTTCATCGTTCATTTCCCTACAGCAAATGTTTGGCAGCCG
GTTCTGAATACCAATGCACGTCAATATTGTACCTTAGCTGGTGTATTAGCTGGTGTATCTTCAATTATTATACTTCTGTT
TGGAGCGTGTGGTATATGATTGGAGCNAGTTTGTGCCAACGTTCAGAGGCGCTCTACTTTTAGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis