Browse Element(s) Details


Os.37967.1.S1_at

Description gb:AK067275.1
DB_XREF= gi:32977293
TID=Os.37967.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 3-oxoacyl-(acyl-carrier-protein) synthase (B1056G08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098L18, full insert sequence.
FL= gb:AK067275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4242011/113-oxoacyl-synthase I, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42400Os.13876.1.S1_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.2.S1_x_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.1.S1_a_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400OsAffx.8612.1.S1_at1/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os07g42430Os.9884.1.S1_at11/117+25402585..25404256expressed protein
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0006636biological_processfatty acid desaturation
GO:0009536cellular_componentplastid
GO:0004312molecular_functionfatty-acid synthase activity
GO:0004315molecular_function3-oxoacyl-[acyl-carrier protein] synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37967.1.S1_at--803--771Chr07:25391901..25391925 (25 bp)
ATGTGGCACTGTCAAACTCATTTGG
LOC_Os07g42420
Os.37967.1.S1_at--888--8611Chr07:25391873..25391897 (25 bp)
TGGTGGGCACAACTCATCAATTCTG
LOC_Os07g42420
Os.37967.1.S1_at--926--9591Chr07:25391860..25391884 (25 bp)
TCATCAATTCTGTTTGCACCCTTCA
LOC_Os07g42420
Os.37967.1.S1_at--1078--1111Chr07:25391835..25391859 (25 bp)
AGTGAACTCGGCCTACGATTATCGC
LOC_Os07g42420
Os.37967.1.S1_at--661--6531Chr07:25391819..25391843 (25 bp)
GATTATCGCTTGCTCCCTCAAATTT
LOC_Os07g42420
Os.37967.1.S1_at--1015--8491Chr07:25391628..25391652 (25 bp)
TGGCATGACCACTCCTAAGTTTCAT
LOC_Os07g42420
Os.37967.1.S1_at--849--6831Chr07:25391610..25391634 (25 bp)
GTTTCATTTTGTATCACCATCGCAA
LOC_Os07g42420
Os.37967.1.S1_at--823--1131Chr07:25391570..25391594 (25 bp)
AGTCCTGGATTTCCTTTTTCTCAAG
LOC_Os07g42420
Os.37967.1.S1_at--2--1691Chr07:25391527..25391551 (25 bp)
AGCCTATGGCCTATGTTATTACTTT
LOC_Os07g42420
Os.37967.1.S1_at--471--951Chr07:25391486..25391510 (25 bp)
AGGACTTTGTGTATCCTACCTGGGC
LOC_Os07g42420
Os.37967.1.S1_at--1082--1431Chr07:25391428..25391452 (25 bp)
AGAACCCTTCTCTAGATTTGGCATA
LOC_Os07g42420
Target Sequence 
ATGTGGCACTGTCAAACTCATTTGGATTTGGTGGGCACAACTCATCAATTCTGTTTGCACCCTTCAAGTGAACTCGGCCT
ACGATTATCGCTTGCTCCCTCAAATTTCCAACCGCGCCATGGTACCGGAACCGCGTATAGAAAACTAGCAAGCAAGTGAA
TTCATGGCTTACACATGCTATGAATAATTGAACATGAAGGTCCAAGCTAAGAAGAGCATTGTGCCATACAACAACAGAGT
GAAGAAAGTAAGAAACCATAGAGGCCATGTCCATGGCATGACCACTCCTAAGTTTCATTTTGTATCACCATCGCAAATAC
ATCCCTGGAAAAGTCCTGGATTTCCTTTTTCTCAAGTGAAGAAGAATATGATGTAGCCTATGGCCTATGTTATTACTTTG
TTTATCTCATCTAGGAGGACTTTGTGTATCCTACCTGGGCCGGTAATTTTTTTTTCTTTTTTCGCCTCACCTCAGAACCC
TTCTCTAGATTTGGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis