Browse Element(s) Details


Os.38093.1.S1_at

Description gb:AK058602.1
DB_XREF= gi:32968620
TID=Os.38093.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-H09, full insert sequence.
FL= gb:AK058602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g524603/11Viral A-type inclusion protein repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein
LOC_Os04g52440Os.53822.1.S1_x_at11/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52440OsAffx.26573.1.S1_x_at1/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein
LOC_Os04g52500Os.16854.1.S1_at11/114+30996071..31000524lecithine cholesterol acyltransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38093.1.S1_at--544--1291Chr04:30976694..30976718 (25 bp)
AGATCGCTGGCTCCTGAAACGACAC
LOC_Os04g52460
Os.38093.1.S1_at--629--8391Chr04:30976768..30976792 (25 bp)
GGCCTTTAAGTTCATCCTGGGAGTC
LOC_Os04g52460
Os.38093.1.S1_at--1017--7311Chr04:30976805..30976829 (25 bp)
GTGCTCATCGGTGTATTTCTTGGGA
LOC_Os04g52460
Os.38093.1.S1_at--1067--6471Chr04:30976833..30976857 (25 bp)
GATACTAGCGTTTATGCCTTTCAGA
NONE
Os.38093.1.S1_at--104--7631Chr04:30976867..30976891 (25 bp)
GGGAAACCCCATTGTCAATACTGCT
NONE
Os.38093.1.S1_at--179--3191Chr04:30976882..30976906 (25 bp)
CAATACTGCTTTCGGTGAACCTCAA
NONE
Os.38093.1.S1_at--393--7771Chr04:30976895..30976919 (25 bp)
GGTGAACCTCAATTGTCTTAGCAGT
NONE
Os.38093.1.S1_at--77--6551Chr04:30976953..30976977 (25 bp)
GATTTTGGTAGGCTTCACTGGAACA
NONE
Os.38093.1.S1_at--640--2491Chr04:30976977..30977001 (25 bp)
AACAGATTCATGACTTCCAGGGAGA
NONE
Os.38093.1.S1_at--364--91Chr04:30977098..30977122 (25 bp)
ATTCCTACCCTTTTGCATGCAGAAG
NONE
Os.38093.1.S1_at--587--1471Chr04:30977118..30977142 (25 bp)
AGAAGGCCATCTGCTGCATGCAATT
NONE
Target Sequence 
AGATCGCTGGCTCCTGAAACGACACCTCCANACCCAACNCAACANCAAGAACTGCGAGAGCNTTCTGGTATCATGGCCTT
TAAGTTCATCCTGGGAGTCGCGCTGCTGTCCGTGCTCATCGGTGTATTTCTTGGGAAGAGATACTAGCGTTTATGCCTTT
CAGAATGTCTACTGGGAAACCCCATTGTCAATACTGCTTTCGGTGAACCTCAATTGTCTTAGCAGTTGAAAACTGTGCAA
ATTCTGCAAAAGTTTGAAAGATTTTGGTAGGCTTCACTGGAACAACAGATTCATGACTTCCAGGGAGAAGTCAGAAAATC
TTGGAAGTTTTTTCTCCTCTTGTTGAGTAATTCCATTTAGTTTCATTTTTTGNTTTAGGGGGCTAGGAATATGATTTTTG
TTTCATTCCTACCCTTTTGCATGCAGAAGGCCATCTGCTGCATGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis