Browse Element(s) Details


Os.38099.1.S1_at

Description gb:AK107037.1
DB_XREF= gi:32992246
TID=Os.38099.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endohydrolase (OSJNBa0010E04.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B10, full insert sequence.
FL= gb:AK107037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6127010/11endo-beta-mannanase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61220Os.11687.1.S1_a_at11/113+34705184..34711251DEAD/DEAH box helicase family protein, expressed
LOC_Os03g61230OsAffx.13566.1.S1_at10/113+34714899..34715909hypothetical protein
LOC_Os03g61240NANA3+34717810..34718187hypothetical protein
LOC_Os03g61249OsAffx.25789.1.S1_at11/113+34722828..34723778No apical meristem protein
LOC_Os03g61260Os.10156.1.S1_a_at11/113+34724407..3472628350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g61270Os.38099.2.S1_x_at11/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.38099.1.S1_at10/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.7260.1.S1_x_at2/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61280Os.7260.1.S1_x_at11/113+34736491..34739744beta-mannan endohydrolase, putative, expressed
LOC_Os03g61280Os.38099.2.S1_x_at4/113+34736491..34739744beta-mannan endohydrolase, putative, expressed
LOC_Os03g61290OsAffx.22646.1.S1_at11/113+34741856..34746534cation/hydrogen exchanger, putative
LOC_Os03g61290OsAffx.4492.1.S1_x_at1/113+34741856..34746534cation/hydrogen exchanger, putative
LOC_Os03g61310Os.19976.1.S1_at10/113+34749011..34752174D-mannose binding lectin family protein, expressed
LOC_Os03g61319OsAffx.25789.1.S1_at11/113+34753071..34754021No apical meristem protein
LOC_Os03g61330Os.30021.1.S1_at10/113+34756059..34759297Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61330Os.30021.2.S1_at9/113+34756059..34759297Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38099.1.S1_at--88--6871Chr03:34732618..34732642 (25 bp)
GTTTGTATATAGCTTGCATCCTTCT
LOC_Os03g61270
Os.38099.1.S1_at--1035--10731Chr03:34732631..34732655 (25 bp)
TTGCATCCTTCTCCTTAGGTATAGT
LOC_Os03g61270
Os.38099.1.S1_at--85--1031Chr03:34732647..34732671 (25 bp)
AGGTATAGTTGTTCGTTGGCACATC
LOC_Os03g61270
Os.38099.1.S1_at--585--431Chr03:34732669..34732693 (25 bp)
ATCTTGCAACTGTAACCTGTCGAAA
LOC_Os03g61270
Os.38099.1.S1_at--485--5131Chr03:34732674..34732698 (25 bp)
GCAACTGTAACCTGTCGAAATCATC
LOC_Os03g61270
Os.38099.1.S1_at--146--7231Chr03:34732687..34732711 (25 bp)
GTCGAAATCATCAGGAACGCTTCAG
LOC_Os03g61270
Os.38099.1.S1_at--1018--9611Chr03:34732697..34732721 (25 bp)
TCAGGAACGCTTCAGGATGGCTGTT
LOC_Os03g61270
Os.38099.1.S1_at--611--6231Chr03:34732712..34732736 (25 bp)
GATGGCTGTTCTGACGATGTATGTT
LOC_Os03g61270
Os.38099.1.S1_at--53--6731Chr03:34732719..34732743 (25 bp)
GTTCTGACGATGTATGTTTTGTACC
LOC_Os03g61270
Os.38099.1.S1_at--134--6811Chr03:34732734..34732758 (25 bp)
GTTTTGTACCATAGTTTCCTGTATA
LOC_Os03g61270
Os.38099.1.S1_at--595--9271Chr03:34732750..34732774 (25 bp)
TCCTGTATAAGGTGTTTTGCAACGG
NONE
Target Sequence 
GTTTGTATATAGCTTGCATCCTTCTCCTTAGGTATAGTTGTTCGTTGGCACATCTTGCAACTGTAACCTGTCGAAATCAT
CAGGAACGCTTCAGGATGGCTGTTCTGACGATGTATGTTTTGTACCATAGTTTCCTGTATAAGGTGTTTTGCAACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis