Browse Element(s) Details


Os.38106.1.S1_at

Description gb:AK106702.1
DB_XREF= gi:32991911
TID=Os.38106.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome5, At5g55490 (P0450A04.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E04, full insert sequence.
FL= gb:AK106702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4719411/11GEX1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47140Os.46006.1.S1_at11/117+28183185..28186149CCT motif family protein, expressed
LOC_Os07g47150Os.33980.2.S1_x_at11/117+28188186..28191119expressed protein
LOC_Os07g47150Os.33980.1.S1_at11/117+28188186..28191119expressed protein
LOC_Os07g47160OsAffx.28940.1.S1_at11/117+28192040..28193067F-box domain containing protein
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47210Os.51144.1.S1_at11/117+28220891..28223204GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g47220OsAffx.22523.1.S1_at11/117+28224076..28224486hypothetical protein
LOC_Os07g47230OsAffx.16746.1.S1_at11/117+28226876..28230131Protein kinase domain containing protein, expressed
LOC_Os07g47240Os.37554.1.S1_at11/117+28231562..28232948expressed protein
LOC_Os07g47250Os.24995.1.S1_a_at11/117+28238772..28243716Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005887cellular_componentintegral to plasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38106.1.S1_at--492--2151Chr07:28209097..28209121 (25 bp)
ACAGCACACAAGCAGTGAGAGCATA
LOC_Os07g47194
Os.38106.1.S1_at--296--5931Chr07:28209079..28209103 (25 bp)
GAGCATATAAAAGCAGTTCTGTCAG
LOC_Os07g47194
Os.38106.1.S1_at--546--5031Chr07:28209067..28209091 (25 bp)
GCAGTTCTGTCAGACATTGTGCTCA
LOC_Os07g47194
Os.38106.1.S1_at--128--6731Chr07:28209064..28209088 (25 bp)
GTTCTGTCAGACATTGTGCTCAAGA
LOC_Os07g47194
Os.38106.1.S1_at--636--3871Chr07:28209061..28209085 (25 bp)
CTGTCAGACATTGTGCTCAAGAAAT
LOC_Os07g47194
Os.38106.1.S1_at--794--5571Chr07:28209041..28209065 (25 bp)
GAAATGAATTATAGTGAAACCTTTT
LOC_Os07g47194
Os.38106.1.S1_at--785--231Chr07:28209009..28209033 (25 bp)
ATATTTTTCTTTTCCAGCTTCTCTG
LOC_Os07g47194
Os.38106.1.S1_at--705--172Chr07:28209007..28209031 (25 bp)
ATTTTTCTTTTCCAGCTTCTCTGAA
LOC_Os07g47194
Os.38106.1.S1_at--359--10311Chr07:28209004..28209028 (25 bp)
TTTCTTTTCCAGCTTCTCTGAAGAT
LOC_Os07g47194
Os.38106.1.S1_at--876--8971Chr07:28208986..28209010 (25 bp)
TGAAGATAACCACATCAGATGAAAT
LOC_Os07g47194
Os.38106.1.S1_at--133--7931Chr07:28208955..28208979 (25 bp)
GGATTGGTTGTACATAAGCTATATT
LOC_Os07g47194
Target Sequence 
ACAGCACACAAGCAGTGAGAGCATATAAAAGCAGTTCTGTCAGACATTGTGCTCAAGAAATGAATTATAGTGAAACCTTT
TTTTTAGTATATTTTTCTTTTCCAGCTTCTCTGAAGATAACCACATCAGATGAAATGGTATTGGATTGGTTGTACATAAG
CTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis