Browse Element(s) Details


Os.38131.2.S1_a_at

Description gb:AK063580.1
DB_XREF= gi:32973598
TID=Os.38131.2
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H07, full insert sequence.
FL= gb:AK063580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3773010/11pollen ankyrin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37740Os.6722.1.S1_at11/1110+19866927..19871650Shaggy-related protein kinase theta, putative, expressed
LOC_Os10g37760Os.37067.1.S1_at11/1110+19877662..19879853Rhomboid family protein, expressed
LOC_Os10g37770Os.46638.1.S1_at11/1110+19881270..19884604methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38131.2.S1_a_at--87--1611NONE
AGCTGCTGAAGGTTGTTGTCATGAG
NONE
Os.38131.2.S1_a_at--995--7911Chr10:19856484..19856508 (25 bp)
GGTTGTTGTCATGAGTTCTGCATCA
LOC_Os10g37730
Os.38131.2.S1_a_at--379--10811Chr10:19856479..19856503 (25 bp)
TTGTCATGAGTTCTGCATCAAATGT
LOC_Os10g37730
Os.38131.2.S1_a_at--978--2291Chr10:19856460..19856484 (25 bp)
AAATGTGCTCTTTATCTTTGCTCAA
LOC_Os10g37730
Os.38131.2.S1_a_at--463--8691Chr10:19856457..19856481 (25 bp)
TGTGCTCTTTATCTTTGCTCAACGA
LOC_Os10g37730
Os.38131.2.S1_a_at--565--9091Chr10:19856442..19856466 (25 bp)
TGCTCAACGAGCAATACCCGTGTTG
LOC_Os10g37730
Os.38131.2.S1_a_at--274--5191Chr10:19856432..19856456 (25 bp)
GCAATACCCGTGTTGAGTTCACTGG
LOC_Os10g37730
Os.38131.2.S1_a_at--969--1211Chr10:19856417..19856441 (25 bp)
AGTTCACTGGCCCACCTGGATCGAT
LOC_Os10g37730
Os.38131.2.S1_a_at--1070--8551Chr10:19856401..19856425 (25 bp)
TGGATCGATTCCGTGCCCTCTTTGT
LOC_Os10g37730
Os.38131.2.S1_a_at--733--7291Chr10:19856389..19856413 (25 bp)
GTGCCCTCTTTGTCGGAATGGAATA
LOC_Os10g37730
Os.38131.2.S1_a_at--950--5231Chr10:19856369..19856393 (25 bp)
GAATAATGTCATTTACCAAGTTGCC
LOC_Os10g37730
Target Sequence 
AGCTGCTGAAGGTTGTTGTCATGAGTTCTGCATCAAATGTGCTCTTTATCTTTGCTCAACGAGCAATACCCGTGTTGAGT
TCACTGGCCCACCTGGATCGATTCCGTGCCCTCTTTGTCGGAATGGAATAATGTCATTTACCAAGTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38131.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis