Browse Element(s) Details


Os.38196.1.A1_at

Description gb:AK111052.1
DB_XREF= gi:32996261
TID=Os.38196.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-C09, full insert sequence.
FL= gb:AK111052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4577911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45744OsAffx.5489.1.S1_at2/113+25791902..25792497hypothetical protein
LOC_Os03g45750Os.53245.1.S1_at11/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_x_at6/113+25797585..25800118expressed protein
LOC_Os03g45750OsAffx.3523.1.S1_at5/113+25797585..25800118expressed protein
LOC_Os03g45760Os.51262.1.S1_at11/113+25800320..25803231expressed protein
LOC_Os03g45770Os.50221.1.S1_at11/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45770OsAffx.31448.1.S1_at1/113+25804805..25812313S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
LOC_Os03g45779Os.38196.1.A1_at11/113+25813713..25815145expressed protein
LOC_Os03g45790NANA3+25816601..25816906expressed protein
LOC_Os03g45800NANA3+25820346..25820702Auxin responsive protein
LOC_Os03g45810OsAffx.23366.2.S1_s_at1/113+25821990..25825596transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820OsAffx.7362.1.S1_x_at2/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820Os.46314.3.S1_at2/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820OsAffx.265.1.S1_at1/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45830OsAffx.25568.1.S1_at11/113+25838442..25838762Auxin responsive protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38196.1.A1_at--712--7991Chr03:25814271..25814295 (25 bp)
GGATGTCACAAATTCACAATGGAGC
LOC_Os03g45779
Os.38196.1.A1_at--347--2971Chr03:25814254..25814278 (25 bp)
AATGGAGCTAGTTGGCATCGAGGTC
LOC_Os03g45779
Os.38196.1.A1_at--236--3552Chr03:25814239..25814263 (25 bp)
CATCGAGGTCGATGCTATTGCATGG
LOC_Os03g45779
Os.38196.1.A1_at--427--631Chr03:25814228..25814252 (25 bp)
ATGCTATTGCATGGAGCTCACGCCG
LOC_Os03g45779
Os.38196.1.A1_at--178--5731Chr03:25814198..25814222 (25 bp)
GACTGCTCAGGGATGCTACCGGAGC
LOC_Os03g45779
Os.38196.1.A1_at--298--7991Chr03:25814188..25814212 (25 bp)
GGATGCTACCGGAGCATGCCACCGT
LOC_Os03g45779
Os.38196.1.A1_at--1099--7451Chr03:25814137..25814161 (25 bp)
GTGTGGCCGTTTATTCCTCCCGAGC
LOC_Os03g45779
Os.38196.1.A1_at--1135--71Chr03:25814125..25814149 (25 bp)
ATTCCTCCCGAGCTACCAATAAGGG
LOC_Os03g45779
Os.38196.1.A1_at--691--2111Chr03:25813756..25813780 (25 bp)
ACATGTGGATCCTACCGACTTTTTA
LOC_Os03g45779
Os.38196.1.A1_at--454--9231Chr03:25813747..25813771 (25 bp)
TCCTACCGACTTTTTATGATTGCAA
LOC_Os03g45779
Os.38196.1.A1_at--1147--5171Chr03:25813728..25813750 (23 bp)
GCAAGTGCCACATCAACAACATGAA
LOC_Os03g45779
Target Sequence 
GGATGTCACAAATTCACAATGGAGCTAGTTGGCATCGAGGTCGATGCTATTGCATGGAGCTCACGCCGCCTTNGACTGCT
CAGGGATGCTACCGGAGCATGCCACCGTNTTNGCCTTGATTCAGGGNTATCGTNGTGTGGCCGTTTATTCCTCCCGAGCT
ACCAATAAGGGCGAGCAACNTCCTCGNTNTGCCCATCCACGGATCCACCCACTGNTGTGCCGCCGCCCAACGGGCNTANT
TGCCACCAGCGCCNTGGCCAAACCAGGGNGTTGNGGCGNTNGGCCACGCCAGCCCACGGNGACCCCTTTNTGTGCTGCCT
NTCCTCTGTNGNTTNCCGCCACCGCGCCGGNGTNTGTNNTGGGCACGTGAGNGAGAAAAAGGTACACTAAAAAATAATCC
AAGAAGAATAGAAGGGAACGAGGAGAAGAAGCAAGAAAGAAAGAAGAGAAGAGAAAGGAAAAAAAAGGTGGGACCCATTG
TATTTTTTTTTATTTTTTTAACCATATAATCACTGACATGTGGATCCTACCGACTTTTTATGATTGCAAGTGCCACATCA
ACAACATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38196.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis