Browse Element(s) Details


Os.38346.1.S1_x_at

Description gb:AK120213.1
DB_XREF= gi:37989836
TID=Os.38346.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome p450 (OSJNBa0051H17.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039G14, full insert sequence.
FL= gb:AK120213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3635011/11Cytochrome P450 71C4, putative, expressed
LOC_Os01g3629411/11Cytochrome P450 family protein, expressed
LOC_Os08g014701/11Cytochrome P450 family protein
LOC_Os08g014501/11Cytochrome P450 71C4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36310OsAffx.1196.1.S1_at2/111+20465995..20466462hypothetical protein
LOC_Os01g36310OsAffx.1196.1.S1_x_at1/111+20465995..20466462hypothetical protein
LOC_Os01g36310OsAffx.6300.1.S1_at1/111+20465995..20466462hypothetical protein
LOC_Os01g36320OsAffx.15648.1.S1_at1/111+20468128..20470095Transposable element protein, putative, Retrotrans_gag
LOC_Os01g36330OsAffx.11347.2.S1_s_at11/111+20472856..20473532hypothetical protein
LOC_Os01g36330OsAffx.11347.2.S1_at10/111+20472856..20473532hypothetical protein
LOC_Os01g36340Os.47541.1.S1_at6/111+20479334..20479587hypothetical protein
LOC_Os01g36340Os.47541.1.S1_x_at5/111+20479334..20479587hypothetical protein
LOC_Os01g36350Os.38346.1.S1_x_at11/111+20480329..20483124Cytochrome P450 71C4, putative, expressed
LOC_Os01g36360OsAffx.22947.1.S1_x_at11/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36360OsAffx.22947.2.S1_x_at4/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36360OsAffx.22947.5.S1_x_at3/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36360OsAffx.22947.3.S1_x_at3/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36370NANA1+20496356..20503961transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38346.1.S1_x_at--677--8734Chr01:20482613..20482637 (25 bp)
TGTCATCGTCAATGCATGGGCTATT
LOC_Os01g36350
Os.38346.1.S1_x_at--773--5472Chr01:20482643..20482667 (25 bp)
GAACTCTGAATCTTGGGAAGCTGCA
LOC_Os01g36350
Os.38346.1.S1_x_at--718--2672Chr01:20482660..20482684 (25 bp)
AAGCTGCAGAGGAGTTTTTGCCTGA
LOC_Os01g36350
Os.38346.1.S1_x_at--469--9592Chr01:20482723..20482747 (25 bp)
TCATAGGGACAGACTTCCAGTTCTT
LOC_Os01g36350
Os.38346.1.S1_x_at--478--3932Chr01:20482763..20482787 (25 bp)
CGGCGGATCTGTCCTGGAATAAACT
LOC_Os01g36350
Os.38346.1.S1_x_at--526--8512Chr01:20482777..20482801 (25 bp)
TGGAATAAACTTTGCTTCTGCGAGC
LOC_Os01g36350
Os.38346.1.S1_x_at--198--3652Chr01:20482791..20482815 (25 bp)
CTTCTGCGAGCATGGAGATCATCCT
LOC_Os01g36350
Os.38346.1.S1_x_at--83--6052Chr01:20482805..20482829 (25 bp)
GAGATCATCCTAGCAAACCTTCTGT
LOC_Os01g36350
Os.38346.1.S1_x_at--640--2632Chr01:20482820..20482844 (25 bp)
AACCTTCTGTACCATTTTGACTGGG
LOC_Os01g36350
Os.38346.1.S1_x_at--1021--7992Chr01:20482843..20482867 (25 bp)
GGATGTTTCAGCTGAAGCAGCCATA
LOC_Os01g36350
Os.38346.1.S1_x_at--710--2432Chr01:20482923..20482947 (25 bp)
AAAAGCTACTGCTTGTACCGGTAGA
LOC_Os01g36350
Target Sequence 
TGTCATCGTCAATGCATGGGCTATTGGAAGGAACTCTGAATCTTGGGAAGCTGCAGAGGAGTTTTTGCCTGAGAGGTTTG
TTGATGNTGGAAGTGCNGCGAACGTAGACTTCATAGGGACAGACTTCCAGTTCTTNCCGTTTGGCGCANGNCGGCGGATC
TGTCCTGGAATAAACTTTGCTTCTGCGAGCATGGAGATCATCCTAGCAAACCTTCTGTACCATTTTGACTGGGATGTTTC
AGCTGAAGCAGCCATAGATAAAGATGGCATTGATATGGCTGAAGCNTTCGGGTTGTCAGTGCAGCTAAAGGAAAAGCTAC
TGCTTGTACCGGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38346.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis