Browse Element(s) Details


OsAffx.11347.2.S1_s_at

Description tigr:9629.m03427
TID=OsAffx.11347.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3633011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36294Os.38346.1.S1_x_at11/111+20451069..20453695Cytochrome P450 family protein, expressed
LOC_Os01g36310OsAffx.1196.1.S1_at2/111+20465995..20466462hypothetical protein
LOC_Os01g36310OsAffx.1196.1.S1_x_at1/111+20465995..20466462hypothetical protein
LOC_Os01g36310OsAffx.6300.1.S1_at1/111+20465995..20466462hypothetical protein
LOC_Os01g36320OsAffx.15648.1.S1_at1/111+20468128..20470095Transposable element protein, putative, Retrotrans_gag
LOC_Os01g36330OsAffx.11347.2.S1_s_at11/111+20472856..20473532hypothetical protein
LOC_Os01g36330OsAffx.11347.2.S1_at10/111+20472856..20473532hypothetical protein
LOC_Os01g36340Os.47541.1.S1_at6/111+20479334..20479587hypothetical protein
LOC_Os01g36340Os.47541.1.S1_x_at5/111+20479334..20479587hypothetical protein
LOC_Os01g36350Os.38346.1.S1_x_at11/111+20480329..20483124Cytochrome P450 71C4, putative, expressed
LOC_Os01g36360OsAffx.22947.1.S1_x_at11/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36360OsAffx.22947.2.S1_x_at4/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36360OsAffx.22947.5.S1_x_at3/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36360OsAffx.22947.3.S1_x_at3/111+20487774..20494151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36370NANA1+20496356..20503961transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11347.2.S1_s_at--363--151Chr01:20472889..20472913 (25 bp)
ATTATGGTGGCCTACTGGGCTGACG
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--650--9911Chr01:20472901..20472925 (25 bp)
TACTGGGCTGACGATGGGTCTTGCC
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--887--5871Chr01:20472929..20472953 (25 bp)
GAGCGCGCAGAGATCATCCAGCCAG
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--732--1771Chr01:20472956..20472980 (25 bp)
ACCGGCGCACCACCTTGAAGGAGAA
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--597--8471Chr01:20472984..20473008 (25 bp)
TGGCGAGGACACTCCAGTGGCCTTT
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--923--9451Chr01:20473378..20473402 (25 bp)
TCTGGCGCGGGTACCGCAACTGCAT
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--218--6171Chr01:20473405..20473429 (25 bp)
GAGGAGGCCGAACACGACTCCCATC
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--671--5711Chr01:20473420..20473444 (25 bp)
GACTCCCATCGTTTGTACTGATCAG
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--150--9931Chr01:20473435..20473459 (25 bp)
TACTGATCAGGCAAGGCGTGTACTC
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--376--2951Chr01:20473447..20473471 (25 bp)
AAGGCGTGTACTCTCTGCGGATGAC
LOC_Os01g36330
OsAffx.11347.2.S1_s_at--178--911Chr01:20473477..20473501 (25 bp)
AGGCTGGCAAGTGCGTGAGCATACC
LOC_Os01g36330
Target Sequence 
ATTATGGTGGCCTACTGGGCTGACGATGGGTCTTGCCGGCGAGCGCGCAGAGATCATCCAGCCAGGCACCGGCGCACCAC
CTTGAAGGAGAAAAGTGGCGAGGACACTCCAGTGGCCTTTCTGGTAACGAGAAGGGTCGTCGGCAGTGAGGTGCCCCTTG
GACCTAGCGGTACCCTCGTTGGCCTAAGCAGGGAAGAAGGGCATTCTGATGGGTGGAGCTATGAGGGCTCTCCGGCCCAA
TTGGCTGGGGTGCTAGATTGTACTGAATTCGAGGCCCAAAGGCTCTGGCGCGGGTACCGCAACTGCATGGGAGGAGGCCG
AACACGACTCCCATCGTTTGTACTGATCAGGCAAGGCGTGTACTCTCTGCGGATGACGCACAAGGCTGGCAAGTGCGTGA
GCATACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11347.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis