Browse Element(s) Details


Os.38444.1.S1_x_at

Description gb:CF327557
DB_XREF= gi:33803366
DB_XREF=NACL--02-B12.g1
CLONE=NACL--02-B12
TID=Os.38444.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38444 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g111002/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g221501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein
LOC_Os10g11070OsAffx.20650.1.S1_at11/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.2.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.3.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.27088.1.A1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.20650.2.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11080OsAffx.30387.1.S1_at11/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_x_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11090Os.2235.3.S1_x_at11/1110+5900922..5902664retrotransposon protein, putative, unclassified
LOC_Os10g11100Os.46874.1.S1_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.46874.1.S1_x_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.8976.1.S1_at4/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.1.S1_x_at2/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.2.S1_x_at1/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11110Os.18580.1.S1_at11/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.27021.1.S1_x_at1/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.53962.1.S1_at1/1110+5910667..5916587expressed protein
LOC_Os10g11120Os.38751.1.A1_at7/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11120Os.49802.1.S2_at1/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11130OsAffx.18213.1.S1_at11/1110+5931182..5932093hypothetical protein
LOC_Os10g11140Os.5319.1.S1_at10/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11140Os.56122.1.S1_at1/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38444.1.S1_x_at--263--6815Chr12:11293811..11293988 (25 bp)
GTTTTCCTCCATTTGCCCTAGGCAA
NONE
Os.38444.1.S1_x_at--31--10393Chr08:13357918..13358095 (25 bp)
TTTTCCTCCATTTGCCCTAGGCAAC
NONE
Os.38444.1.S1_x_at--1162--2617Chr12:11293981..11294005 (25 bp)
CTAGGCAACGTCTCTTGCCGTCAGC
NONE
Os.38444.1.S1_x_at--519--10696Chr12:11293995..11294019 (25 bp)
TTGCCGTCAGCCCAAGACCTTGCTC
NONE
Os.38444.1.S1_x_at--671--2777Chr12:11294008..11294032 (25 bp)
AAGACCTTGCTCCATCTCTTGCCAT
NONE
Os.38444.1.S1_x_at--128--9571Chr05:12304598..12304622 (25 bp)
TCTTGCCATCAGCCCAAGGCCTTAG
NONE
Os.38444.1.S1_x_at--389--2617Chr12:11702433..11702456 (24 bp)
AACCCTACGTCCAGGTTGCTGCCAT
NONE
Os.38444.1.S1_x_at--22--1917Chr12:11702438..11702461 (24 bp)
ACGTCCAGGTTGCTGCCATGTGAGT
NONE
Os.38444.1.S1_x_at--1106--7891Chr05:12304644..12304668 (25 bp)
GGTTGCTGCCATGTGAGTGAAGTCC
NONE
Os.38444.1.S1_x_at--1052--9091Chr05:12304647..12304671 (25 bp)
TGCTGCCATGTGAGTGAAGTCCGGT
NONE
Os.38444.1.S1_x_at--211--3491Chr05:12304653..12304677 (25 bp)
CATGTGAGTGAAGTCCGGTGGAAGT
NONE
Target Sequence 
GTTTTCCTCCATTTGCCCTAGGCAACGTCTCTTGCCGTCAGCCCAAGACCTTGCTCCATCTCTTGCCATCAGCCCAAGGC
CTTAGCCTCGCACAACCCTACGTCCAGGTTGCTGCCATGTGAGTGAAGTCCGGTGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38444.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis