Browse Element(s) Details

Os.38447.1.S1_s_at

Description

gb:BI118737
DB_XREF= gi:14571369
DB_XREF=EST124
CLONE=BNHN-n20
TID=Os.38447.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38447 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_195408.1 (A.thaliana) TINY-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07030	11/11	AP2 domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06980	Os.4198.1.S1_at	11/11	6	+	3313113..3314453	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980	Os.4198.1.S1_x_at	11/11	6	+	3313113..3314453	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990	OsAffx.27483.1.S1_at	11/11	6	+	3316032..3316379	hypothetical protein
LOC_Os06g07000	Os.25299.1.S1_x_at	11/11	6	+	3318113..3321611	F-box domain containing protein, expressed
LOC_Os06g07000	OsAffx.10341.1.S1_x_at	4/11	6	+	3318113..3321611	F-box domain containing protein, expressed
LOC_Os06g07010	Os.25299.3.A1_at	11/11	6	+	3321910..3326627	transposon protein, putative, unclassified, expressed
LOC_Os06g07020	Os.23613.1.S1_at	10/11	6	+	3327558..3330550	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g07030	Os.38447.1.S1_s_at	11/11	6	+	3336100..3337157	AP2 domain containing protein, expressed
LOC_Os06g07030	Os.4804.1.S1_at	11/11	6	+	3336100..3337157	AP2 domain containing protein, expressed
LOC_Os06g07040	Os.15798.1.S1_at	11/11	6	+	3341465..3345319	AUX/IAA family protein, expressed
LOC_Os06g07060	OsAffx.22575.1.S1_at	4/11	6	+	3354616..3355026	hypothetical protein
LOC_Os06g07070	Os.4208.1.S1_at	11/11	6	+	3359543..3362524	Protein kinase domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.38447.1.S1_s_at--443--923	1	Chr06:3336746..3336770 (25 bp)	TCCATCCATCTAGTTCGTAGTCCTT	LOC_Os06g07030
Os.38447.1.S1_s_at--270--55	1	Chr06:3336749..3336773 (25 bp)	ATCCATCTAGTTCGTAGTCCTTAGC	LOC_Os06g07030
Os.38447.1.S1_s_at--52--37	1	Chr06:3336753..3336777 (25 bp)	ATCTAGTTCGTAGTCCTTAGCCACC	LOC_Os06g07030
Os.38447.1.S1_s_at--793--955	1	Chr06:3336756..3336780 (25 bp)	TAGTTCGTAGTCCTTAGCCACCCCA	LOC_Os06g07030
Os.38447.1.S1_s_at--161--1047	1	Chr06:3336769..3336793 (25 bp)	TTAGCCACCCCAAGACACAGAGAGA	LOC_Os06g07030
Os.38447.1.S1_s_at--955--169	1	Chr06:3336771..3336795 (25 bp)	AGCCACCCCAAGACACAGAGAGAGA	LOC_Os06g07030
Os.38447.1.S1_s_at--1083--671	1	Chr06:3336880..3336904 (25 bp)	GTTCGGCGAAATGCGATTGAGGTCG	LOC_Os06g07030
Os.38447.1.S1_s_at--148--887	1	Chr06:3336897..3336921 (25 bp)	TGAGGTCGGAGGAGCCCACAAGTAT	LOC_Os06g07030
Os.38447.1.S1_s_at--975--707	1	Chr06:3336901..3336925 (25 bp)	GTCGGAGGAGCCCACAAGTATATCC	LOC_Os06g07030
Os.38447.1.S1_s_at--1102--801	1	Chr06:3336904..3336928 (25 bp)	GGAGGAGCCCACAAGTATATCCAAT	LOC_Os06g07030
Os.38447.1.S1_s_at--798--587	1	Chr06:3336908..3336932 (25 bp)	GAGCCCACAAGTATATCCAATAATG	LOC_Os06g07030

Target Sequence

TCCATCCATCTAGTTCGTAGTCCTTAGCCACCCCAAGACACAGAGAGAGAGTAGCAGCTAGTAGCTATAGCTAGTCAGCG
AAGCGGATAGCGCCAAGGAGGCGGTCGTGGACGGGGGCGCACGCAAGGTGTTCGGCGAAATGCGATTGAGGTCGGAGGAG
CCCACAAGTATATCCAATAATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis