Browse Element(s) Details


Os.38811.1.S1_a_at

Description gb:NM_189511.1
DB_XREF= gi:34906105
GEN=P0020E09.13
TID=Os.38811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0020E09.13 (P0020E09.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0020E09.13 (P0020E09.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7458011/11DnaJ domain containing protein, expressed
LOC_Os02g1018011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74620Os.38089.3.S1_at10/111+43543913..43544731hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000740biological_processnuclear membrane fusion
GO:0006457biological_processprotein folding
GO:0009553biological_processfemale gametophyte development
GO:0009558biological_processcellularization of megagametophyte
GO:0010197biological_processpolar nuclei fusion
GO:0010198biological_processsynergid death
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38811.1.S1_a_at--11--6972Chr01:43517897..43517921 (25 bp)
GTAGCTGTACAGAAGCACTCAACAT
LOC_Os01g74580
Os.38811.1.S1_a_at--1102--8052Chr01:43517926..43517950 (25 bp)
GGAGAACTTGTTGATGCATTAACAC
LOC_Os01g74580
Os.38811.1.S1_a_at--974--5232Chr01:43519414..43519438 (25 bp)
GAATCCGAGAAGCACTAATGAGAGC
LOC_Os01g74580
Os.38811.1.S1_a_at--1082--6592Chr01:43519470..43519494 (25 bp)
GATTGGTATAAGATCCTTGGCATTT
LOC_Os01g74580
Os.38811.1.S1_a_at--1050--6352Chr01:43519481..43519505 (25 bp)
GATCCTTGGCATTTCAAAGACGGCA
LOC_Os01g74580
Os.38811.1.S1_a_at--821--132Chr01:43519518..43519542 (25 bp)
ATTAAGCGTGCCTACAAGAAGTTGG
LOC_Os01g74580
Os.38811.1.S1_a_at--47--5352Chr01:43519535..43519559 (25 bp)
GAAGTTGGCACTGCAGTGGCATCCA
LOC_Os01g74580
Os.38811.1.S1_a_at--537--2112Chr01:43519594..43519618 (25 bp)
ACATGTTTCGAGAAATTGCTGCAGC
LOC_Os01g74580
Os.38811.1.S1_a_at--704--72Chr01:43519608..43519954 (25 bp)
ATTGCTGCAGCTTATGAGGTTCTTG
LOC_Os01g74580
Os.38811.1.S1_a_at--186--12Chr01:43519966..43519990 (25 bp)
AAACGTGTAAGATACGACCGAGGAG
LOC_Os01g74580
Os.38811.1.S1_a_at--145--1492Chr01:43520057..43520081 (25 bp)
AGCAATACACATTCCATTACGATGG
LOC_Os01g74580
Target Sequence 
GTAGCTGTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGGACATGGGAATCCGAGAAGCACTA
ATGAGAGCTGAAAAGCAGCTTAAGTTAAGCAAAAGAAAAGATTGGTATAAGATCCTTGGCATTTCAAAGACGGCATCAGC
TGCAGATATTAAGCGTGCCTACAAGAAGTTGGCACTGCAGTGGCATCCAGATAAAAATGTAGATAACCGAGAAGAAGCAG
AAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAG
GATCTTGATGAGATGAATATGGGAGGAGGAGGTGGTGGTTTCAATCCTTTTGGGGGAGGTGGTCAGCAATACACATTCCA
TTACGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38811.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis