Browse Element(s) Details


Os.38884.1.S1_at

Description gb:AK066571.1
DB_XREF= gi:32976589
TID=Os.38884.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0021G06.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068K23, full insert sequence.
FL= gb:AK119603.1 gb:AK066571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1451411/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g126691/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14440OsAffx.16261.1.S1_at10/117+8237465..8238290hypothetical protein
LOC_Os07g14450OsAffx.28441.1.S1_at11/117+8239687..8240493hypothetical protein
LOC_Os07g14460OsAffx.28442.1.S1_at11/117+8245083..8245349hypothetical protein
LOC_Os07g14470OsAffx.20818.1.S1_at11/117+8246699..8248756hypothetical protein
LOC_Os07g14480NANA7+8249928..8250332hypothetical protein
LOC_Os07g14490OsAffx.30223.2.S1_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14490OsAffx.30223.1.S1_s_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14500OsAffx.30223.1.S1_at11/117+8257378..8258557hypothetical protein
LOC_Os07g14514Os.38884.2.S1_x_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.27723.1.S1_a_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38884.1.S1_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38157.1.S1_s_at1/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14530Os.35590.2.S1_at11/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.3.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.1.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14540Os.8775.1.S1_at11/117+8286140..8289457Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g14549NANA7+8291920..8292728NA
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38884.1.S1_at--1085--35119Chr12:24298044..24298068 (25 bp)
CATGCTTTGTATGTTAGAATTGTTT
NONE
Os.38884.1.S1_at--382--101960Chr10:148187..148211 (25 bp)
TATTATGGTTACAGATTATCCCTTA
NONE
Os.38884.1.S1_at--601--10115Chr07:8274597..8274621 (25 bp)
TATCCCTTAATGAACAATCCTAACT
LOC_Os07g14514
Os.38884.1.S1_at--1103--6534Chr06:3479126..3479148 (22 bp)
GATTTATAACTAGTATTATCCACCA
NONE
Os.38884.1.S1_at--514--1510Chr10:148274..148297 (24 bp)
ATTATCCACCATACATGTTTGTCAT
NONE
Os.38884.1.S1_at--248--754Chr10:148287..148312 (25 bp)
ATGTTTGTCATATACTCCTTGGTTT
NONE
Os.38884.1.S1_at--400--9914Chr10:148301..148324 (24 bp)
TACTCCTTGGTTTAATATATGCTAA
NONE
Os.38884.1.S1_at--685--8212Chr10:204995..205051 (25 bp)
TGGAAAAAAGATCCCGCCCCAAGAG
NONE
Os.38884.1.S1_at--340--10292Chr10:194308..194332 (25 bp)
TTTCCTTGACACACAAGTTTATAAT
NONE
Os.38884.1.S1_at--611--232Chr10:205196..205220 (25 bp)
ATATTCAGTACCCTGTATCCAGCTG
NONE
Os.38884.1.S1_at--571--3452Chr10:205201..205225 (25 bp)
CAGTACCCTGTATCCAGCTGGAATA
NONE
Target Sequence 
CATGCTTTGTATGTTAGAATTGTTTNGGTTAATCATATTATGGTTACAGATTATCCCTTAATGAACAATCCTAACTTACA
GNTGAACTATAATTATATGAGGTCAAGATTTATAACTAGTATTATCCACCATACATGTTTGTCATATACTCCTTGGTTTA
ATATATGCTAAAGGTAGGTTATTGTTATTAAAGGGGGTGGCTATCAATCTAGGAAAGTGGATGAGTTTAGAGACAAGGAA
TTTTATACAGGTTCAGGCCTTCTTATTTAAGAAGTAATACCCTACTCCTGTCCGGGGATGATTCCGCCGAGTGTATTATT
GATTGTATAAACTGGAAAAAAGATCCCGCCCCAAGAGGCACACGGACCCCTCCTTATATAGGGGAAGAGGTCCGCTTTAC
AAAATACAGTCCATATCCTAACGGAATATGGGATTACAGATAAAATACAATCGTAACCGAGTAGGATCCCGGGTATTTCC
TTGACACACAAGTTTATAATCTAACCCGAGTTCTCATAAAGATATTCTATCTATATTCAGTACCCTGTATCCAGCTGGAA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis