Browse Element(s) Details


Os.38884.2.S1_x_at

Description gb:NM_186839.1
DB_XREF= gi:34900763
GEN=P0021G06.4
TID=Os.38884.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0021G06.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0021G06.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1451411/11retrotransposon protein, putative, unclassified, expressed
LOC_Os12g3510010/11transposon protein, putative, Mutator sub-class
LOC_Os08g3477010/11transposon protein, putative, Mutator sub-class
LOC_Os03g2893010/11transposon protein, putative, Mutator sub-class
LOC_Os05g110701/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14440OsAffx.16261.1.S1_at10/117+8237465..8238290hypothetical protein
LOC_Os07g14450OsAffx.28441.1.S1_at11/117+8239687..8240493hypothetical protein
LOC_Os07g14460OsAffx.28442.1.S1_at11/117+8245083..8245349hypothetical protein
LOC_Os07g14470OsAffx.20818.1.S1_at11/117+8246699..8248756hypothetical protein
LOC_Os07g14480NANA7+8249928..8250332hypothetical protein
LOC_Os07g14490OsAffx.30223.2.S1_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14490OsAffx.30223.1.S1_s_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14500OsAffx.30223.1.S1_at11/117+8257378..8258557hypothetical protein
LOC_Os07g14514Os.38884.2.S1_x_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.27723.1.S1_a_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38884.1.S1_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38157.1.S1_s_at1/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14530Os.35590.2.S1_at11/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.3.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.1.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14540Os.8775.1.S1_at11/117+8286140..8289457Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g14549NANA7+8291920..8292728NA
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38884.2.S1_x_at--512--2294Chr12:21312533..21312557 (25 bp)
AAATGAGAGCACCACCCATCCGGAG
LOC_Os12g35100
Os.38884.2.S1_x_at--591--6014Chr12:21312555..21312579 (25 bp)
GAGAGCACTTCACATCCTGATGATG
LOC_Os12g35100
Os.38884.2.S1_x_at--476--674Chr12:21312577..21312601 (25 bp)
ATGAAGCCACATCCCCTATTAAAAA
LOC_Os12g35100
Os.38884.2.S1_x_at--605--6174Chr12:21312699..21312723 (25 bp)
GAGGAGGAGCCCCAGCTATGCCCAA
LOC_Os12g35100
Os.38884.2.S1_x_at--531--3694Chr12:21312714..21312738 (25 bp)
CTATGCCCAAATTGTGACCCACTAG
LOC_Os12g35100
Os.38884.2.S1_x_at--1089--714Chr12:21312760..21312784 (25 bp)
ATGATAGTGATGCAGCAGCCTCCTC
LOC_Os12g35100
Os.38884.2.S1_x_at--860--5774Chr12:21312831..21312855 (25 bp)
GACGATGACAATGACTCTGACCTTG
LOC_Os12g35100
Os.38884.2.S1_x_at--856--9474Chr12:21312846..21312870 (25 bp)
TCTGACCTTGAGCATGTGTTTGCAT
LOC_Os12g35100
Os.38884.2.S1_x_at--8--6155Chr12:21312903..21312927 (25 bp)
GAGGTGTTCGCAGATACTACTACTT
LOC_Os12g35100
Os.38884.2.S1_x_at--1159--5394Chr12:21312933..21312957 (25 bp)
GAAGCTGTTACACACCATGCTATAA
LOC_Os12g35100
Os.38884.2.S1_x_at--397--5751Chr07:8274883..8274907 (25 bp)
GACGTGGGCTAATCAGCGATTTATT
LOC_Os07g14514
Target Sequence 
AAATGAGAGCACCACCCATCCGGAGAGCACTTCACATCCTGATGATGAAGCCACATCCCCTATTAAAAAGAGTGCAAAGA
AGGTTGTAAAAAAGTGTGCAAAGAGGAGGAGCCAAGACGATGACGATGATGAAGAGGTTTGGGATGATGAGAAGGAAGAG
AACGAAGAGGAGGAGCCCCAGCTATGCCCAAATTGTGACCCACTAGAGGTTGATAGTGATAGCAGCTATGATAGTGATGC
AGCAGCCTCCTCTGACTCTGAATATGATTGTGATGATCTTGATGACCAAATACATGATGACGATGACAATGACTCTGACC
TTGAGCATGTGTTTGCATATGATTTTGATAACCCATGTATTGATGAAGGAGAGGTGTTCGCAGATACTACTACTTGCAAG
GAAGCTGTTACACACCATGCTATAATCCATGACTATTCTTTTGAAACTGAGAAAAAGGACAAGCAGAGTGTTGTCGAAAT
GACAACTGCATACGTCGAAAGACGTGGGCTAATCAGCGATTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38884.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis