Browse Element(s) Details


Os.39087.1.S1_at

Description gb:CF276272
DB_XREF= gi:33653658
DB_XREF=14ETL--01-F20.g1
CLONE=14ETL--01-F20
TID=Os.39087.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pathogenesis related protein (P0034C11.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g145509/11Pathogen-related protein, putative, expressed
LOC_Os06g200301/11group II intron splicing factor CRS1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14520OsAffx.23246.1.S1_x_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14520OsAffx.23246.1.S1_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14530Os.30173.2.S1_x_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.2.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.1.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14540Os.33904.1.S1_at11/111+8149597..8150487Stigma-specific protein, Stig1 containing protein, expressed
LOC_Os01g14550Os.39087.1.S1_at9/111+8156651..8158347Pathogen-related protein, putative, expressed
LOC_Os01g14570NANA1+8160665..8163814transposon protein, putative, unclassified
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39087.1.S1_at--696--831Chr01:8157439..8157463 (25 bp)
ATGGAGGGCCCCTTCATGGAGCACC
LOC_Os01g14550
Os.39087.1.S1_at--912--3971Chr01:8157478..8157502 (25 bp)
CGGGTTGAGTTTTTCGGCATTTGCA
LOC_Os01g14550
Os.39087.1.S1_at--849--4951NONE
GCATTTGCATTTTCCATGTTGACGA
NONE
Os.39087.1.S1_at--665--8211Chr01:8157978..8158002 (25 bp)
GGAATTCTTCTACGAACGCGGCAAT
LOC_Os01g14550
Os.39087.1.S1_at--736--6191Chr01:8158105..8158129 (25 bp)
GAGGAACCAACACAACATGTCACCC
LOC_Os01g14550
Os.39087.1.S1_at--861--2291Chr01:8158136..8158160 (25 bp)
AAATGTATCGGATTACCAACAGATC
LOC_Os01g14550
Os.39087.1.S1_at--888--1251Chr01:8158156..8158180 (25 bp)
AGATCCGCACCTGCTTTTAATTTTA
LOC_Os01g14550
Os.39087.1.S1_at--908--9612Chr06:11483297..11483494 (25 bp)
TCATGCTACATTGCTACTCCTTTAT
LOC_Os06g20030
Os.39087.1.S1_at--995--6911NONE
GTATGAAGTATAAACCCCACATGGG
NONE
Os.39087.1.S1_at--1106--7831Chr01:8158274..8158298 (25 bp)
GGTACATGTAGCTAGAGTTGTTCTA
LOC_Os01g14550
Os.39087.1.S1_at--572--3731Chr01:8158296..8158320 (25 bp)
CTACTTGATCTTTTGGCATGGCACT
LOC_Os01g14550
Target Sequence 
ATGGAGGGCCCCTTCATGGAGCACCCGCCCCATGGCGAGCGGGTTGAGTTTTTCGGCATTTGCATTTTCCATGTTGACGA
GGAGATGAAGGTTGAGAAGGCGGAATTCTTCTACGAACGCGGCAATTTCCTCGCGAGCTTCTTGAGCGCGCCTGCTGCTG
CTGCTACTGATGCTGCGTCAGGCTCAGGATGCCCTGTCATGGGAGGAAATTAACTGAACTGAAGCACTGAGGAACCAACA
CAACATGTCACCCATTTGAAAATGTATCGGATTACCAACAGATCCGCACCTGCTTTTAATTTTATTTCATGCTACATTGC
TACTCCTTTATTAGTAGTACTATAAATAAAGACTCATTGTTTGTATGGTATGAAGTATAAACCCCACATGGGTGGTGGGT
ACATGTAGCTAGAGTTGTTCTACTTGATCTTTTGGCATGGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis