Browse Element(s) Details


Os.39305.1.A1_x_at

Description gb:CF297303
DB_XREF= gi:33666336
DB_XREF=30DGS--08-B08.g1
CLONE=30DGS--08-B08
TID=Os.39305.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39305 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g376401/11ADP-ribosylation factor-like protein 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37590NANA11+21688410..21691504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein
LOC_Os11g37630OsAffx.31349.1.S1_x_at11/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.31349.2.S1_x_at10/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.1.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.2.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37640Os.11161.1.S1_at11/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640OsAffx.19219.1.S1_at10/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_x_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37650OsAffx.19220.1.S1_at9/1111+21720431..21725273hypothetical protein
LOC_Os11g37660OsAffx.7329.1.S1_at11/1111+21727528..21729717pentatricopeptide, putative, expressed
LOC_Os11g37670OsAffx.31350.1.S1_at11/1111+21740077..21743107expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39305.1.A1_x_at--14--2831NONE
AAGTTGACCCATATCGCCTGTATTT
NONE
Os.39305.1.A1_x_at--852--5891Chr11:21717558..21717579 (22 bp)
GAGCTGGCAGGTTGTGTTTGTTTGC
LOC_Os11g37640
Os.39305.1.A1_x_at--363--9991NONE
TACCACTTCAGTGTTCATTTGTGTT
NONE
Os.39305.1.A1_x_at--646--1711NONE
ACCACTTCAGTGTTCATTTGTGTTT
NONE
Os.39305.1.A1_x_at--1070--3311NONE
CACTTCAGTGTTCATTTGTGTTTCA
NONE
Os.39305.1.A1_x_at--1089--3651NONE
CTTCAGTGTTCATTTGTGTTTCACA
NONE
Os.39305.1.A1_x_at--943--10531NONE
TTCAGTGTTCATTTGTGTTTCACAT
NONE
Os.39305.1.A1_x_at--224--9651NONE
TCAGTGTTCATTTGTGTTTCACATG
NONE
Os.39305.1.A1_x_at--657--1111NONE
AGTGTTCATTTGTGTTTCACATGTC
NONE
Os.39305.1.A1_x_at--648--10311NONE
TTTCACATGTCTGCAAAAAAACCCA
NONE
Os.39305.1.A1_x_at--340--9011NONE
TGCAAAAAAACCCATGTTTGTATTC
NONE
Target Sequence 
AAGTTGACCCATATCGCCTGTATTTCCATGGATTTGTTGGAGCTGGCAGGTTGTGTTTGTTTGCTGCTGCTGCTGCTACC
ACTTCAGTGTTCATTTGTGTTTCACATGTCTGCAAAAAAACCCATGTTTGTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39305.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis