Browse Element(s) Details


Os.39998.1.A1_x_at

Description gb:CF319163
DB_XREF= gi:33690924
DB_XREF=HD--09-J05.b1
CLONE=HD--09-J05
TID=Os.39998.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39998 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g543109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54260NANA4+32088752..32094910transposon protein, putative, unclassified
LOC_Os04g54270NANA4+32095550..32098786transposon protein, putative, unclassified
LOC_Os04g54280Os.27639.1.S1_x_at8/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.53731.1.S1_at3/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.9913.1.S1_at2/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54300Os.6764.2.S1_at10/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54300Os.7705.1.S1_at9/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54310OsAffx.14412.1.S1_at11/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.6764.1.S1_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_x_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_at8/114+32117280..32118805hypothetical protein
LOC_Os04g54320Os.7707.1.S1_at11/114+32119350..32120467expressed protein
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39998.1.A1_x_at--435--6653Chr04:31935192..31935216 (25 bp)
GTTGATGACGCATGACCTGTGGGCC
NONE
Os.39998.1.A1_x_at--1145--10773Chr04:31935193..31935217 (25 bp)
TTGATGACGCATGACCTGTGGGCCA
NONE
Os.39998.1.A1_x_at--91--8873Chr04:31935194..31935218 (25 bp)
TGATGACGCATGACCTGTGGGCCAG
NONE
Os.39998.1.A1_x_at--614--6313Chr04:31935195..31935219 (25 bp)
GATGACGCATGACCTGTGGGCCAGA
NONE
Os.39998.1.A1_x_at--279--693Chr04:31935196..31935220 (25 bp)
ATGACGCATGACCTGTGGGCCAGAG
NONE
Os.39998.1.A1_x_at--520--8933Chr04:31935197..31935221 (25 bp)
TGACGCATGACCTGTGGGCCAGAGC
NONE
Os.39998.1.A1_x_at--188--1853Chr04:31935199..31935223 (25 bp)
ACGCATGACCTGTGGGCCAGAGCGT
NONE
Os.39998.1.A1_x_at--646--5832Chr04:31935205..31935229 (25 bp)
GACCTGTGGGCCAGAGCGTGATTAA
NONE
Os.39998.1.A1_x_at--757--4252Chr04:31935207..31935231 (25 bp)
CCTGTGGGCCAGAGCGTGATTAACG
NONE
Os.39998.1.A1_x_at--101--6551Chr04:31935224..31935248 (25 bp)
GATTAACGGCCGGATCATGTCACTG
NONE
Os.39998.1.A1_x_at--719--131Chr04:31935225..31935249 (25 bp)
ATTAACGGCCGGATCATGTCACTGG
NONE
Target Sequence 
GTTGATGACGCATGACCTGTGGGCCAGAGCGTGATTAACGGCCGGATCATGTCACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39998.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis