Browse Element(s) Details


Os.40244.1.S1_at

Description gb:AK108542.1
DB_XREF= gi:32993751
TID=Os.40244.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-D07, full insert sequence.
FL= gb:AK108542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3194010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31890Os.49438.1.S2_at11/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31890Os.49438.1.S1_at10/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31900OsAffx.19111.1.S1_s_at11/1111+18249803..18251900Acyl carrier protein 2, chloroplast precursor, putative, expressed
LOC_Os11g31910Os.31312.5.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31910Os.31312.2.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31920NANA11+18258323..18264478retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31930OsAffx.31258.1.S1_at11/1111+18267476..18267754hypothetical protein
LOC_Os11g31940Os.40244.1.S1_at10/1111+18268684..18271290GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g31950NANA11+18273787..18274151hypothetical protein
LOC_Os11g31960OsAffx.31257.1.S1_s_at11/1111+18279252..18287338expressed protein
LOC_Os11g31960Os.26757.1.A1_at11/1111+18279252..18287338expressed protein
LOC_Os11g31960OsAffx.31257.1.S1_at9/1111+18279252..18287338expressed protein
LOC_Os11g31970NANA11+18295970..18299793retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40244.1.S1_at--522--971Chr11:18270590..18270614 (25 bp)
AGGAGCGACCAAGATCGTCATCCCG
LOC_Os11g31940
Os.40244.1.S1_at--594--751Chr11:18270723..18270747 (25 bp)
ATGTACCACAATGATCAGCTCCGGG
LOC_Os11g31940
Os.40244.1.S1_at--38--8211Chr11:18270766..18270790 (25 bp)
GGAAGGTCAACTCGGATGTCGCCAT
LOC_Os11g31940
Os.40244.1.S1_at--326--9951Chr11:18270795..18270819 (25 bp)
TACGCAGACTACTATGGCGCCTTCA
LOC_Os11g31940
Os.40244.1.S1_at--1086--9611Chr11:18270817..18270841 (25 bp)
TCATGCATCTCCTCCAAAAGGCTGA
LOC_Os11g31940
Os.40244.1.S1_at--546--2191Chr11:18270833..18270974 (25 bp)
AAAGGCTGACCTCTTAGGGTTCGAG
LOC_Os11g31940
Os.40244.1.S1_at--660--71NONE
ATTGCTCAAGGCATGTTGCGGCGCA
NONE
Os.40244.1.S1_at--1010--3911Chr11:18271001..18271025 (25 bp)
CGGCGCAGGCGGAAAGTACAACTTT
LOC_Os11g31940
Os.40244.1.S1_at--890--2631Chr11:18271032..18271056 (25 bp)
AACCTAATGTGTGGCGCAGTGGGAA
LOC_Os11g31940
Os.40244.1.S1_at--1044--2931Chr11:18271125..18271149 (25 bp)
AAGGCTATGGCTTTGTCCCTTATTA
LOC_Os11g31940
Os.40244.1.S1_at--135--1071Chr11:18271154..18271178 (25 bp)
AGGGTTTGCTCAACCAGCTGACATT
LOC_Os11g31940
Target Sequence 
AGGAGCGACCAAGATCGTCATCCCGGGCAACTTCCCGATCGGGTGCTCGCCGAGTTACCTCTCCCTCTTCTCCACGGCGA
TCTCCGGCGACTACGACGACCGGGGCTGCCTCAAGAGTTACAACTCCTTCGCCATGTACCACAATGATCAGCTCCGGGCC
GCCATAGATGACCTCCGGAAGGTCAACTCGGATGTCGCCATCGTCTACGCAGACTACTATGGCGCCTTCATGCATCTCCT
CCAAAAGGCTGACCTCTTAGGGTTCGAGGAGGACTCATTGCTCAAGGCATGTTGCGGCGCAGGCGGAAAGTACAACTTTG
ACATGAACCTAATGTGTGGCGCAGTGGGAACGAACGTTCGTGCAGACCCAGCGCAGCACATTAGCTGGGATGGCATCCAC
CTCACTCAACAGGCGTACAAGGCTATGGCTTTGTCCCTTATTATGGAAGGGTTTGCTCAACCAGCTGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis