Browse Element(s) Details


Os.40360.1.S1_x_at

Description gb:AK120499.1
DB_XREF= gi:37990122
TID=Os.40360.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121P19, full insert sequence.
FL= gb:AK120499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0929011/11expressed protein
LOC_Os07g127408/11hypothetical protein
LOC_Os02g567308/11hypothetical protein
LOC_Os08g059908/11hypothetical protein
LOC_Os06g202308/11hypothetical protein
LOC_Os07g482108/11hypothetical protein
LOC_Os02g050208/11expressed protein
LOC_Os07g160908/11hypothetical protein
LOC_Os08g327307/11hypothetical protein
LOC_Os04g209007/11hypothetical protein
LOC_Os08g136007/11hypothetical protein
LOC_Os04g187807/11hypothetical protein
LOC_Os04g149807/11hypothetical protein
LOC_Os08g279807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g247707/11hypothetical protein
LOC_Os01g354307/11hypothetical protein
LOC_Os04g050207/11hypothetical protein
LOC_Os06g429007/11hypothetical protein
LOC_Os09g199907/11hypothetical protein
LOC_Os04g065607/11hypothetical protein
LOC_Os09g253007/11hypothetical protein
LOC_Os02g403606/11retrotransposon protein, putative, unclassified
LOC_Os06g071106/11hypothetical protein
LOC_Os12g336706/11hypothetical protein
LOC_Os02g408506/11hypothetical protein
LOC_Os09g043396/11expressed protein
LOC_Os06g214306/11hypothetical protein
LOC_Os07g363606/11F-box domain containing protein, expressed
LOC_Os01g212906/11hypothetical protein
LOC_Os03g518506/11hypothetical protein
LOC_Os05g090106/11hypothetical protein
LOC_Os04g261406/11hypothetical protein
LOC_Os04g194905/11hypothetical protein
LOC_Os11g242205/11hypothetical protein
LOC_Os12g137505/11hypothetical protein
LOC_Os08g363405/11K+ potassium transporter family protein, expressed
LOC_Os04g250705/11hypothetical protein
LOC_Os02g355204/11hypothetical protein
LOC_Os04g188404/11hypothetical protein
LOC_Os07g162904/11hypothetical protein
LOC_Os12g125404/11hypothetical protein
LOC_Os03g026304/11hypothetical protein
LOC_Os04g056203/11hypothetical protein
LOC_Os05g207603/11hypothetical protein
LOC_Os09g147503/11hypothetical protein
LOC_Os12g288903/11hypothetical protein
LOC_Os05g137303/11Zinc knuckle family protein
LOC_Os08g284903/11hypothetical protein
LOC_Os01g741302/11hypothetical protein
LOC_Os08g061502/11hypothetical protein
LOC_Os08g131201/11hypothetical protein
LOC_Os11g250701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g258301/11retrotransposon protein, putative, unclassified
LOC_Os04g128901/11hypothetical protein
LOC_Os12g331701/11hypothetical protein
LOC_Os08g225501/11hypothetical protein
LOC_Os01g279101/11hypothetical protein
LOC_Os01g337001/11hypothetical protein
LOC_Os08g217101/11hypothetical protein
LOC_Os12g201691/11hypothetical protein
LOC_Os01g600901/11hypothetical protein
LOC_Os04g107301/11hypothetical protein
LOC_Os10g109501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g587701/11retrotransposon protein, putative, unclassified
LOC_Os08g142801/11hypothetical protein
LOC_Os09g018001/11hypothetical protein
LOC_Os06g216601/11hypothetical protein
LOC_Os04g023401/11hypothetical protein
LOC_Os04g254801/11hypothetical protein
LOC_Os02g388301/11hypothetical protein
LOC_Os03g383101/11hypothetical protein
LOC_Os04g574701/11hypothetical protein
LOC_Os11g472501/11hypothetical protein
LOC_Os12g438601/11hypothetical protein
LOC_Os10g171101/11hypothetical protein
LOC_Os12g198401/11hypothetical protein
LOC_Os12g114301/11hypothetical protein
LOC_Os06g315701/11hypothetical protein
LOC_Os08g031101/11hypothetical protein
LOC_Os08g085301/11hypothetical protein
LOC_Os04g265401/11hypothetical protein
LOC_Os09g175101/11hypothetical protein
LOC_Os12g289601/11hypothetical protein
LOC_Os05g308301/11hypothetical protein
LOC_Os04g085301/11Insect antifreeze protein
LOC_Os02g244801/11hypothetical protein
LOC_Os08g132401/11hypothetical protein
LOC_Os05g265501/11hypothetical protein
LOC_Os06g144301/11hypothetical protein
LOC_Os02g111201/11hypothetical protein
LOC_Os06g326301/11hypothetical protein
LOC_Os07g405301/11hypothetical protein
LOC_Os06g369801/11hypothetical protein
LOC_Os12g116701/11hypothetical protein
LOC_Os01g353701/11hypothetical protein
LOC_Os03g222201/11hypothetical protein
LOC_Os03g049101/11hypothetical protein
LOC_Os12g198301/11hypothetical protein
LOC_Os08g222101/11hypothetical protein
LOC_Os04g287001/11hypothetical protein
LOC_Os12g136201/11hypothetical protein
LOC_Os04g181101/11hypothetical protein
LOC_Os07g242801/11hypothetical protein
LOC_Os02g452101/11expressed protein
LOC_Os12g363701/11hypothetical protein
LOC_Os04g197101/11hypothetical protein
LOC_Os10g111601/11hypothetical protein
LOC_Os07g143201/11hypothetical protein
LOC_Os09g239801/11hypothetical protein
LOC_Os11g431301/11hypothetical protein
LOC_Os06g214201/11hypothetical protein
LOC_Os08g282801/11hypothetical protein
LOC_Os11g121701/11hypothetical protein
LOC_Os05g230901/11hypothetical protein
LOC_Os12g273101/11Transferase family protein
LOC_Os02g379001/11hypothetical protein
LOC_Os07g375201/11hypothetical protein
LOC_Os04g260301/11hypothetical protein
LOC_Os08g039801/11Insect antifreeze protein
LOC_Os05g058701/11hypothetical protein
LOC_Os06g405401/11hypothetical protein
LOC_Os10g134901/11retrotransposon protein, putative, unclassified
LOC_Os04g066701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09240NANA9+4948220..4954135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09250OsAffx.21897.5.S1_x_at4/119+4954357..4957281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09260OsAffx.29774.1.S1_at11/119+4960788..4961434hypothetical protein
LOC_Os09g09270OsAffx.29775.1.S1_at10/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09270OsAffx.29033.1.S1_at1/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09279Os.54774.1.S1_x_at2/119+4965329..4966709NA
LOC_Os09g09279Os.54774.1.S1_at2/119+4965329..4966709NA
LOC_Os09g09290Os.40360.1.S1_x_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40360.1.S1_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40855.5.S1_x_at1/119+4971698..4979074expressed protein
LOC_Os09g09310NANA9+4982025..4982288hypothetical protein
LOC_Os09g09320Os.50376.2.S1_at11/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09320Os.50376.1.S1_a_at10/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09330Os.25163.1.A1_x_at11/119+4991064..4996394expressed protein
LOC_Os09g09330Os.53720.1.S1_at11/119+4991064..4996394expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40360.1.S1_x_at--495--4171Chr09:4972066..4972090 (25 bp)
CGCCTACATAGCCTGGCCTATTATG
LOC_Os09g09290
Os.40360.1.S1_x_at--843--29199Chr12:27200528..27200547 (20 bp)
ATAGCCTGGCCTATTATGCTGCCGT
LOC_Os12g43860
Os.40360.1.S1_x_at--1093--9932Chr09:4972023..4972047 (25 bp)
TACGACTTCGCAGCCGGCTTGTCTT
LOC_Os09g09290
Os.40360.1.S1_x_at--377--36976Chr12:27199256..27199280 (25 bp)
CTATTATGCCGCCATTAGTGGGCAT
NONE
Os.40360.1.S1_x_at--481--865129Chr12:27199274..27199298 (25 bp)
TGGGCATCTTCGCTTTCACCGTCGA
NONE
Os.40360.1.S1_x_at--852--451158Chr12:27199313..27199337 (25 bp)
GCCGACTGGTGTCTTCATTGTTATT
NONE
Os.40360.1.S1_x_at--819--88115Chr12:4426355..4426795 (25 bp)
TGTTGGACGACTTTGTTCCCACATT
NONE
Os.40360.1.S1_x_at--559--949141Chr12:27199446..27199470 (25 bp)
TCTGCCTCACTACACCAATTGGTCT
NONE
Os.40360.1.S1_x_at--1050--985138Chr12:27199456..27199480 (25 bp)
TACACCAATTGGTCTTCCATTGAGT
NONE
Os.40360.1.S1_x_at--551--3140Chr12:27199463..27199487 (25 bp)
ATTGGTCTTCCATTGAGTAGTGAGT
NONE
Os.40360.1.S1_x_at--1099--713144Chr12:27199467..27199491 (25 bp)
GTCTTCCATTGAGTAGTGAGTCGGG
NONE
Target Sequence 
CGCCTACATAGCCTGGCCTATTATGCTGCCGTTGCTGGGCGTCTACGACTTCGCAGCCGGCTTGTCTTCGCCGCCGCCGA
TTGGTATCTCCGCCTACACGGCTGGCCTATTATGCCGCCATTAGTGGGCATCTTCGCTTTCACCGTCGACCGCCTTCGTC
GCCGCCGACTGGTGTCTTCATTGTTATTGTTGGACGACTTTGTTCCCACATTGGCCACCTCTGCCATCACCAAGGGGAAT
ATTACAAAGCTAAGTCATCATTTATTTTATTCTTTATATGATATTTTTCCTTTTCCTCTGCCTCACTACACCAATTGGTC
TTCCATTGAGTAGTGAGTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40360.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis