Browse Element(s) Details


Os.40545.1.S1_x_at

Description gb:CF303194
DB_XREF= gi:33674955
DB_XREF=ABF1--01-J15.g1
CLONE=ABF1--01-J15
TID=Os.40545.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503E05.9 (P0503E05.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2616011/11HASTY, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26190NANA1+14823636..14826747retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009965biological_processleaf morphogenesis
GO:0035281biological_processpre-microRNA export from nucleus
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005635cellular_componentnuclear envelope
GO:0005487molecular_functionnucleocytoplasmic transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40545.1.S1_x_at--781--1871Chr01:14796388..14796412 (25 bp)
ACGAGTGCATCTTCAGGGCTGTTAG
LOC_Os01g26160
Os.40545.1.S1_x_at--393--8951Chr01:14796444..14796468 (25 bp)
TGACTTCTGCAACTACCGTGCCAAG
LOC_Os01g26160
Os.40545.1.S1_x_at--377--1491Chr01:14797555..14797706 (25 bp)
AGCAACGAAATCATCCCAGGATCTT
LOC_Os01g26160
Os.40545.1.S1_x_at--351--10071Chr01:14797748..14797772 (25 bp)
TAGTGCTATATTCGATGGCTCATCT
LOC_Os01g26160
Os.40545.1.S1_x_at--37--5311Chr01:14797915..14797937 (23 bp)
GAAGGCTTACTTCAGCAGCTTCTTT
LOC_Os01g26160
Os.40545.1.S1_x_at--626--5011Chr01:14797927..14797951 (25 bp)
GCAGCTTCTTTCTTTAAAGTGGTCA
LOC_Os01g26160
Os.40545.1.S1_x_at--34--7511Chr01:14797945..14797969 (25 bp)
GTGGTCACAACCAAATCTTGCTGTT
LOC_Os01g26160
Os.40545.1.S1_x_at--788--431Chr01:14797959..14797983 (25 bp)
ATCTTGCTGTTATTCATGGTCACTA
LOC_Os01g26160
Os.40545.1.S1_x_at--387--7831Chr01:14797976..14798000 (25 bp)
GGTCACTATTTGGATTCTTTGGGTC
LOC_Os01g26160
Os.40545.1.S1_x_at--590--7791Chr01:14797997..14798021 (25 bp)
GGTCCTTTCTTGAGACATTACCCAG
LOC_Os01g26160
Os.40545.1.S1_x_at--411--151Chr01:14798013..14798037 (25 bp)
ATTACCCAGATGCAGTTGCCTGTAT
LOC_Os01g26160
Target Sequence 
ACGAGTGCATCTTCAGGGCTGTTAGAACTATGGAGTGAAGAGCTAGAGGGGAAGAGTGACTTCTGCAACTACCGTGCCAA
GCTGNTNGNTCTNNTNNNNNNCNNNGCATCTCAAAGGCCTGGTATTACAGCAACAAGCATTGTACAGAGAATAAACATTG
TATTTGGAGATGCTAATGAAGCAACGAAATCATCCCAGGATCTTGATGCAATGGAAGGTGCGCAGCTGGGGCTGGAAGCA
GTTGTTAGTGCTATATTCGATGGCTCATCTGATTATTCAAAGATTGACCAGGACACAAAATTCCAAATTCACAGGATCTT
TGAAGGCTTACTTCAGCAGCTTCTTTCTTTAAAGTGGTCACAACCAAATCTTGCTGTTATTCATGGTCACTATTTGGATT
CTTTGGGTCCTTTCTTGAGACATTACCCAGATGCAGTTGCCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40545.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis