Browse Element(s) Details


Os.40548.1.S1_at

Description gb:AK120306.1
DB_XREF= gi:37989929
TID=Os.40548.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hydoxyethylthiazole kinase (P0503E05.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052O08, full insert sequence.
FL= gb:AK120306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2613011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40548.1.S1_at--229--6431Chr01:14785515..14785539 (25 bp)
GATCTTGACTCGAGAGGTCACCGTC
LOC_Os01g26130
Os.40548.1.S1_at--1099--3531Chr01:14785575..14785599 (25 bp)
CATCCTGAGAGAGGCGGGTCCCTTG
LOC_Os01g26130
Os.40548.1.S1_at--1109--7231Chr01:14785732..14785756 (25 bp)
GTCGCCGTTATCTTCTGCATCATGG
LOC_Os01g26130
Os.40548.1.S1_at--766--7511Chr01:14785837..14785861 (25 bp)
GTGGACCGTGCCAGTGCTTTTGCAT
LOC_Os01g26130
Os.40548.1.S1_at--824--10391Chr01:14785854..14785878 (25 bp)
TTTTGCATCTTGAAGAGCGTCCCCT
LOC_Os01g26130
Os.40548.1.S1_at--771--2771Chr01:14785866..14785890 (25 bp)
AAGAGCGTCCCCTGAATCATGTGTA
LOC_Os01g26130
Os.40548.1.S1_at--193--9011Chr01:14785878..14785902 (25 bp)
TGAATCATGTGTACTGTCCGCGCCC
LOC_Os01g26130
Os.40548.1.S1_at--533--7231Chr01:14785893..14785917 (25 bp)
GTCCGCGCCCTGCAAAATCGATGGG
LOC_Os01g26130
Os.40548.1.S1_at--193--7891Chr01:14785975..14785999 (25 bp)
GGTTAGTCAGTCAGTTTTGATTCTT
LOC_Os01g26130
Os.40548.1.S1_at--914--3851Chr01:14786020..14786044 (25 bp)
CTGACATTAGCCATCAATCTGACAT
LOC_Os01g26130
Os.40548.1.S1_at--1044--7111Chr01:14786060..14786084 (25 bp)
GTCATGGAACGGTCTGAACTCTCGA
LOC_Os01g26130
Target Sequence 
GATCTTGACTCGAGAGGTCACCGTCTGCACGTCGAGGCAGTAGAGAGCATCGATGAGATGCATCCTGAGAGAGGCGGGTC
CCTTGGCGCCAGACTCCATCCCGATCTCCCCGGCCAGGCCAAAGACAGCAAGGGCGCACGCCGCCGCGGCCATGGCGTCG
GAAGGCTCCTCCACCACCGCGAGGAAGGCCGCGATGAGGGCCGTCGCGGCGCAGCCCGTCGCCGTTATCTTCTGCATCAT
GGCCACGCCGTTGCTCACTCCGACCACCCGCTCGCCGTCGGTGACGTAACCGACGGCCCCGGACACCGCGATGACGGCAC
CGGTGGACCGTGCCAGTGCTTTTGCATCTTGAAGAGCGTCCCCTGAATCATGTGTACTGTCCGCGCCCTGCAAAATCGAT
GGGAATTGATTGGAACATTGTACATTATATACTAGTATCAATGTACTAGTAAATTGTTTTGGTTAGTCAGTCAGTTTTGA
TTCTTGACAGAACTGAAAGATCAATCTGACATTAGCCATCAATCTGACATTTTGGATAATAATCAGTCATGGAACGGTCT
GAACTCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis