Browse Element(s) Details


Os.408.1.S1_a_at

Description gb:AY398581.1
DB_XREF= gi:37655078
GEN=Myb
TID=Os.408.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.408 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) Myb factor protein (Myb) mRNA, complete cds, alternatively spliced.
PROD=Myb factor protein
FL= gb:AY398581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7441011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class
LOC_Os01g74410Os.408.1.S1_a_at11/111+43423249..43424821Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74430OsAffx.7575.4.A1_at11/111+43431289..43431711hypothetical protein
LOC_Os01g74440NANA1+43439629..43440255SRF-type transcription factor family protein
LOC_Os01g74450Os.7475.1.S1_at11/111+43442595..43444069Aquaporin TIP1.1, putative, expressed
LOC_Os01g74460Os.52442.1.A1_at10/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74460OsAffx.21919.1.S1_at2/111+43447015..43452373SAND family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.408.1.S1_a_at--347--8631Chr01:43423836..43423860 (25 bp)
TGGGTGAACTACCTGCATCCAGGGC
LOC_Os01g74410
Os.408.1.S1_a_at--732--9971Chr01:43423845..43423869 (25 bp)
TACCTGCATCCAGGGCTGAAGCGAG
LOC_Os01g74410
Os.408.1.S1_a_at--1010--2491Chr01:43423926..43423950 (25 bp)
AACAGGTGGTCTCGCATCGCCAAGA
LOC_Os01g74410
Os.408.1.S1_a_at--627--1671Chr01:43424134..43424158 (25 bp)
AGCCGCAGCCAGAGGATGAGTCGTC
LOC_Os01g74410
Os.408.1.S1_a_at--1125--9031Chr01:43424173..43424197 (25 bp)
TGCAGGCCCAACATCATGAGGACCA
LOC_Os01g74410
Os.408.1.S1_a_at--957--8091Chr01:43424192..43424216 (25 bp)
GGACCAGCACCAACTGTTCCTTCAT
LOC_Os01g74410
Os.408.1.S1_a_at--221--10551Chr01:43424212..43424236 (25 bp)
TTCATCCTCTCTGGAACGACGACAT
LOC_Os01g74410
Os.408.1.S1_a_at--876--9331Chr01:43424301..43424325 (25 bp)
TCGCCGCTCTGGGATATCGATGACG
LOC_Os01g74410
Os.408.1.S1_a_at--403--7951Chr01:43424312..43424336 (25 bp)
GGATATCGATGACGCCTTCTTCTGC
LOC_Os01g74410
Os.408.1.S1_a_at--851--10551Chr01:43424328..43424352 (25 bp)
TTCTTCTGCTCGGATTATTCGCTAC
LOC_Os01g74410
Os.408.1.S1_a_at--683--9431Chr01:43424337..43424361 (25 bp)
TCGGATTATTCGCTACCTCTCTGGG
LOC_Os01g74410
Target Sequence 
TGGGTGAACTACCTGCATCCAGGGCTGAAGCGAGGGAGGATGAGCCCCGAGGAGGAGAGGATGGTGGTGCAGCTCCACGC
CAAGCTCGGCAACAGGTGGTCTCGCATCGCCAAGAGCATTCCTGGCCGCACCGACAACGAGATCAAGAACTACTGGCGCA
CCCACCTGCGCAAGCTCAAGCTCAAACAGCAAAAGCAGCAGCAGTCCGACGACCACCACAACGACAACGACGACGACGAC
GACCGCAACTCCTCCTCCTCTTCGTCCTCCTCCAACAGCAACAGCAACCTGCAGCAGCAGCCGCAGCCAGAGGATGAGTC
GTCGGCCAGTGGCAGCCTGCAGGCCCAACATCATGAGGACCAGCACCAACTGTTCCTTCATCCTCTCTGGAACGACGACA
TCATCGTCGACGTCGACTGCTGGAGCAGCAGCACCAACGTCGTCGCTCCGCCGCCGATGCCCGCCTCGCCGCTCTGGGAT
ATCGATGACGCCTTCTTCTGCTCGGATTATTCGCTACCTCTCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.408.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis