Browse Element(s) Details


Os.40808.1.S1_x_at

Description gb:NM_193596.1
DB_XREF= gi:34914275
GEN=B1151A10.4
TID=Os.40808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1151A10.4 (B1151A10.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1151A10.4 (B1151A10.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3913411/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39120OsAffx.23573.1.S1_s_at11/111+22331757..22332214RING zinc finger ankyrin protein, putative
LOC_Os01g39120Os.21180.2.S1_x_at7/111+22331757..22332214RING zinc finger ankyrin protein, putative
LOC_Os01g39134Os.40808.1.S1_x_at11/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39134Os.16183.1.S1_at10/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39150OsAffx.23574.1.S1_x_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39150OsAffx.23574.1.S1_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39160OsAffx.23575.1.S1_x_at11/111+22366437..22366952expressed protein
LOC_Os01g39170OsAffx.676.2.A1_at11/111+22367478..22368073hypothetical protein
LOC_Os01g39180OsAffx.23577.1.S1_s_at11/111+22369777..22372161hypothetical protein
LOC_Os01g39180Os.29932.2.S1_at1/111+22369777..22372161hypothetical protein
LOC_Os01g39190OsAffx.8958.1.S1_at11/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.8473.1.S1_x_at3/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.2.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.23574.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.25367.1.S1_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.3.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.675.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40808.1.S1_x_at--443--8131Chr01:22353406..22353430 (25 bp)
GGACTTCCGGGCTCAGCACAACGAA
LOC_Os01g39134
Os.40808.1.S1_x_at--1055--3971Chr01:22353339..22353404 (25 bp)
CGAGTGGAGTTCAAAACGAGTTCAA
LOC_Os01g39134
Os.40808.1.S1_x_at--1099--8151Chr01:22353307..22353331 (25 bp)
GGAAGCGAATCCATGAGACAATTTG
LOC_Os01g39134
Os.40808.1.S1_x_at--446--5451Chr01:22350534..22350558 (25 bp)
GAACGCAGATATTTCCCATATTGGG
LOC_Os01g39134
Os.40808.1.S1_x_at--987--4451Chr01:22350497..22350521 (25 bp)
GCTAAGGAGCGGTTTTCCAAACTTG
LOC_Os01g39134
Os.40808.1.S1_x_at--911--5431Chr01:22350335..22350359 (25 bp)
GAACCTGTTCTTGATAAGCTCCATC
LOC_Os01g39134
Os.40808.1.S1_x_at--404--6451Chr01:22350323..22350347 (25 bp)
GATAAGCTCCATCTTTCAGAACGTT
LOC_Os01g39134
Os.40808.1.S1_x_at--354--2691Chr01:22350284..22350307 (24 bp)
AAGCTGCCCATGCTATTTCAGAGGA
LOC_Os01g39134
Os.40808.1.S1_x_at--1028--7971Chr01:22349448..22349472 (25 bp)
GGATGACATGTTCAATTGGCTAATC
LOC_Os01g39134
Os.40808.1.S1_x_at--1001--6591Chr01:22349370..22349394 (25 bp)
GATTGAGAACCCGTATGCATTTTAT
LOC_Os01g39134
Os.40808.1.S1_x_at--442--4951Chr01:22349354..22349378 (25 bp)
GCATTTTATGGCAGCGTCTTCCTTA
LOC_Os01g39134
Target Sequence 
GGACTTCCGGGCTCAGCACAACGAATCGAGTGGAGTTCAAAACGAGTTCAATAAGGCTGGAAGCGAATCCATGAGACAAT
TTGGAGTAAGTGTTTTAATTAATGATTTGCAGGAGAGACAGAGAGACAAGGATGGTGATGGAAAGCTAAACTTTGAAGAA
TATTTTCATGGGCTACATGACCATATACATGGTTATGATTACGAGAACGCAGATATTTCCCATATTGGGAACAATACAGT
AGCTAAGGAGCGGTTTTCCAAACTTGACAAAGACAGTGATGGGTTTATTTCAGAGCACGAACTAGAACCTGTTCTTGATA
AGCTCCATCTTTCAGAACGTTATTATGCTAGACAACAAGCTGCCCATGCTATTTCAGAGGATGACATGTTCAATTGGCTA
ATCCAAAAATTGCAGGCTGACAAAGATCATGATGGAAGACTAACTTTGGATGAGATGATTGAGAACCCGTATGCATTTTA
TGGCAGCGTCTTCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40808.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis