Browse Element(s) Details

Os.41016.1.S1_at

Description

gb:NM_193243.1
DB_XREF= gi:34913569
GEN=OSJNBa0086A10.16
TID=Os.41016.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41016 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative 1-aminocyclopropane-1-carboxylate oxidase (OSJNBa0086A10.16), mRNA.
PROD=putative 1-aminocyclopropane-1-carboxylateoxidase
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g35230	11/11	oxidoreductase, 2OG-Fe oxygenase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g35200	OsAffx.32056.1.S1_at	11/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200	OsAffx.32056.1.S1_x_at	11/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200	OsAffx.30536.1.S1_x_at	1/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200	OsAffx.8676.1.S1_at	1/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210	OsAffx.10637.3.S1_s_at	11/11	1	+	19816033..19819719	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210	OsAffx.10637.1.S1_s_at	11/11	1	+	19816033..19819719	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210	OsAffx.10637.4.S1_s_at	8/11	1	+	19816033..19819719	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35220	Os.35344.3.S1_x_at	10/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.3.S1_x_at	9/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.2.S1_s_at	8/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	Os.35344.18.S1_x_at	8/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.5.S1_x_at	6/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.5.S1_at	5/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.1.S1_s_at	4/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.2.S1_at	4/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.31552.2.S1_at	1/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35230	Os.41016.1.S1_at	11/11	1	+	19832380..19835214	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g35240	OsAffx.23518.1.S1_at	11/11	1	+	19836827..19838637	hypothetical protein
LOC_Os01g35240	OsAffx.23518.1.S1_s_at	9/11	1	+	19836827..19838637	hypothetical protein
LOC_Os01g35240	Os.29072.1.S1_at	4/11	1	+	19836827..19838637	hypothetical protein
LOC_Os01g35254	OsAffx.23519.1.S1_at	11/11	1	+	19843603..19849337	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254	Os.14491.2.S1_x_at	5/11	1	+	19843603..19849337	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254	Os.47463.1.S1_x_at	4/11	1	+	19843603..19849337	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35254	OsAffx.11334.1.S1_at	1/11	1	+	19843603..19849337	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35270	NA	NA	1	+	19853690..19855895	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35280	NA	NA	1	+	19857412..19860744	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016491	molecular_function	oxidoreductase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.41016.1.S1_at--140--323	1	Chr01:19832620..19832642 (23 bp)	CAAGATGGTTTCGAACGAGGAGTAC	LOC_Os01g35230
Os.41016.1.S1_at--45--773	1	Chr01:19832579..19832603 (25 bp)	GGGTGGTGATCAAGTCTAGCCAAGA	LOC_Os01g35230
Os.41016.1.S1_at--552--283	1	Chr01:19832568..19832592 (25 bp)	AAGTCTAGCCAAGACGCCAGGGTCT	LOC_Os01g35230
Os.41016.1.S1_at--563--277	1	Chr01:19832558..19832582 (25 bp)	AAGACGCCAGGGTCTCCATTGCTGT	LOC_Os01g35230
Os.41016.1.S1_at--857--769	1	Chr01:19832549..19832573 (25 bp)	GGGTCTCCATTGCTGTCTTCTTCAA	LOC_Os01g35230
Os.41016.1.S1_at--562--89	1	Chr01:19832463..19832487 (25 bp)	AGGCCGGCACGGTTCCGGCGCTTCT	LOC_Os01g35230
Os.41016.1.S1_at--684--837	1	Chr01:19832447..19832471 (25 bp)	GGCGCTTCTCCGTGCCGGAGTTCAT	LOC_Os01g35230
Os.41016.1.S1_at--224--729	1	Chr01:19832436..19832460 (25 bp)	GTGCCGGAGTTCATGCGTTCTCGAA	LOC_Os01g35230
Os.41016.1.S1_at--107--59	1	Chr01:19832424..19832448 (25 bp)	ATGCGTTCTCGAAGGGAATCCGGCC	LOC_Os01g35230
Os.41016.1.S1_at--588--1057	1	Chr01:19832419..19832443 (25 bp)	TTCTCGAAGGGAATCCGGCCATGGC	LOC_Os01g35230
Os.41016.1.S1_at--787--813	1	Chr01:19832410..19832434 (25 bp)	GGAATCCGGCCATGGCAAGTCATCG	LOC_Os01g35230

Target Sequence

CAAGATGGTTTCGAACGAGGAGTACAAGAGCGTGGAGCACAGGGTGGTGATCAAGTCTAGCCAAGACGCCAGGGTCTCCA
TTGCTGTCTTCTTCAACCCAGCCAAGCGCGATGCCTCCGACCTGTTCGGGCCCCTCCCGGAGCTCCTCACCGCGGAGAGG
CCGGCACGGTTCCGGCGCTTCTCCGTGCCGGAGTTCATGCGTTCTCGAAGGGAATCCGGCCATGGCAAGTCATCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis