Browse Element(s) Details


Os.41226.1.S1_at

Description gb:CR291914
DB_XREF= gi:44678480
DB_XREF=CR291914
CLONE=p840h09p3
TID=Os.41226.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.6 (P0501G01.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g433806/11glycosyltransferase family protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43360Os.30361.1.S1_at11/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43360Os.30361.2.S1_x_at7/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43370Os.9195.1.S1_at11/111+25135378..25140247expressed protein
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43390Os.32068.1.S1_at11/111+25150846..25154987Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41226.1.S1_at--511--6131Chr01:25140730..25140754 (25 bp)
GAGGTATATAAAGCCACCGCCAGAA
LOC_Os01g43380
Os.41226.1.S1_at--17--951Chr01:25140681..25140705 (25 bp)
AGGACGGTAGATCGGTAGCACTTAA
LOC_Os01g43380
Os.41226.1.S1_at--692--10071Chr01:25140647..25140671 (25 bp)
TAGGGCGATGATTCTTTCAGCAGGA
LOC_Os01g43380
Os.41226.1.S1_at--983--10251Chr01:25140619..25140643 (25 bp)
TTTGTTCATTCTTTGCCTCGACTAA
LOC_Os01g43380
Os.41226.1.S1_at--946--9791Chr01:25140589..25140613 (25 bp)
TAACCGGTCGCAACCTGATGGGTGT
LOC_Os01g43380
Os.41226.1.S1_at--569--3991Chr01:25140525..25140549 (25 bp)
CGAGGCTTTGTAAATTTGCCCATTT
LOC_Os01g43380
Os.41226.1.S1_at--972--791Chr01:25140499..25140523 (25 bp)
ATGGGTGTGATCATCCAGGACATCG
NONE
Os.41226.1.S1_at--71--8131Chr01:25140482..25140506 (25 bp)
GGACATCGAGTTGCAATCCTAGATT
NONE
Os.41226.1.S1_at--719--6571Chr01:25140461..25140485 (25 bp)
GATTCTGTAGATTTGGCTTTGCGCC
NONE
Os.41226.1.S1_at--170--10291Chr01:25140444..25140468 (25 bp)
TTTGCGCCGGACCTTGTGTTGATCT
NONE
Os.41226.1.S1_at--438--6651Chr01:25140427..25140451 (25 bp)
GTTGATCTCGCATACTTTTTCTTGT
NONE
Target Sequence 
GAGGTATATAAAGCCACCGCCAGAAGACGCTGGTAGCTTGAATGATACTAGGACGGTAGATCGGTAGCACTTAACCACAT
NCTTAGGGCGATGATTCTTTCAGCAGGANATTTTGTTCATTCTTTGCCTCGACTAATGTCCTAACCGGTCGCAACCTGAT
GGGTGTGATTGNTTTNTGTCCAGTTTTGTCCTGCCCCGCTNATGTTCGAGGCTTTGTAAATTTGCCCATTTGATGGGTGT
GATCATCCAGGACATCGAGTTGCAATCCTAGATTCTGTAGATTTGGCTTTGCGCCGGACCTTGTGTTGATCTCGCATACT
TTTTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis