Browse Element(s) Details


Os.414.1.S1_at

Description gb:U34597.1
DB_XREF= gi:1002914
TID=Os.414.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.414 (NCBI UniGene Cluster)
DEF=Oryza sativa cap-binding protein p26 mRNA, complete cds.
PROD=p26
FL= gb:AK099169.1 gb:AK069207.1 gb:U34597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7388010/11Eukaryotic translation initiation factor 4E-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73850NANA1+43115969..43116601hypothetical protein
LOC_Os01g73860OsAffx.2472.2.S1_at11/111+43123292..43126338hypothetical protein
LOC_Os01g73860OsAffx.1155.1.S1_at1/111+43123292..43126338hypothetical protein
LOC_Os01g73870Os.35344.18.S1_x_at9/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870Os.35344.3.S1_x_at7/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870OsAffx.22940.5.S1_x_at2/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73880Os.414.1.S1_at10/111+43138795..43142028Eukaryotic translation initiation factor 4E-1, putative, expressed
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0009615biological_processresponse to virus
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0000339molecular_functionRNA cap binding
GO:0000340molecular_functionRNA 7-methylguanosine cap binding
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.414.1.S1_at--1157--10131Chr01:43140677..43140701 (25 bp)
TATCCATCACCCAAGCAAGTTGGTT
LOC_Os01g73880
Os.414.1.S1_at--131--8651Chr01:43140703..43140727 (25 bp)
TGGGAGCTGACTTCCATTGCTTTAA
LOC_Os01g73880
Os.414.1.S1_at--994--2291Chr01:43140744..43140768 (25 bp)
AAATGGGAAGATCCTATCTGTGCTA
LOC_Os01g73880
Os.414.1.S1_at--97--2311Chr01:43140777..43140801 (25 bp)
AAATGGACCTTCAGCTGTGGCAGAG
LOC_Os01g73880
Os.414.1.S1_at--1088--4211NONE
CCGACACAATGTGGTTGCATACTTT
NONE
Os.414.1.S1_at--1008--8111Chr01:43141673..43141697 (25 bp)
GGACTCGATTGGGTTCATTGTTCAT
LOC_Os01g73880
Os.414.1.S1_at--356--1031Chr01:43141798..43141822 (25 bp)
AGGTCTCAAGAACCGCTACACAGTT
LOC_Os01g73880
Os.414.1.S1_at--412--2191Chr01:43141815..43141839 (25 bp)
ACACAGTTTGATCTGAGCACTCCTG
LOC_Os01g73880
Os.414.1.S1_at--1039--1491Chr01:43141830..43141854 (25 bp)
AGCACTCCTGTCCAGATATCCAAGA
LOC_Os01g73880
Os.414.1.S1_at--340--6251Chr01:43141876..43141900 (25 bp)
GATGGGTTTTCTTCGATGCTTTAGT
LOC_Os01g73880
Os.414.1.S1_at--873--10071Chr01:43141897..43141921 (25 bp)
TAGTGTTTGTCATTCGCTTGTAGCG
LOC_Os01g73880
Target Sequence 
TATCCATCACCCAAGCAAGTTGGTTGTGGGAGCTGACTTCCATTGCTTTAAGAATAAAATCGAGCCAAAATGGGAAGATC
CTATCTGTGCTAATGGAGGTAAATGGACCTTCAGCTGTGGCAGAGGAAAGTCCGACACAATGTGGTTGCATACTTTATTG
GCAATGATTGGCGAACAATTCGATTATGGGGATGAAATTTGTGGAGCAGTTGTTAGTGTGCGTGGCAAGCAGGAAAGAAT
AGCTATCTGGACTAAAAATGCTGCCAATGAAGCTGCTCAGATAAGCATTGGGAAGCAGTGGAAAGAATTTCTGGATTACA
AGGACTCGATTGGGTTCATTGTTCATGACGATGCAAAAAAGATGGACAAAGGTCTCAAGAACCGCTACACAGTTTGATCT
GAGCACTCCTGTCCAGATATCCAAGAGAGTAGTATATCCACATGTAGGATGGGTTTTCTTCGATGCTTTAGTGTTTGTCA
TTCGCTTGTAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis