Browse Element(s) Details


Os.4168.1.S1_s_at

Description gb:D12777.1
DB_XREF= gi:218142
TID=Os.4168.1
CNT=142
FEA=FLmRNA
TIER=FL+Stack
STK=45
UG=Os.4168 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for aspartic proteinase, complete cds.
PROD=aspartic proteinase
FL= gb:D12777.1 gb:AK065206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0463011/11Aspartic proteinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04584Os.9847.1.S1_at11/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04584Os.55688.1.S1_at1/115+2121913..2128292Transferase family protein, expressed
LOC_Os05g04600Os.55031.2.S1_x_at11/115+2143260..2144910CjMDR1, putative, expressed
LOC_Os05g04610Os.27393.1.S1_s_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04610Os.27393.1.S1_a_at11/115+2146997..2149527ABC transporter family protein, expressed
LOC_Os05g04620Os.5191.1.S1_at10/115+2150222..2152229expressed protein
LOC_Os05g04630Os.4168.1.S1_s_at11/115+2152939..2157111Aspartic proteinase precursor, putative, expressed
LOC_Os05g04640OsAffx.14545.1.S1_x_at11/115+2157537..2162957WRKY DNA binding domain containing protein, expressed
LOC_Os05g04650Os.53713.1.S1_at11/115+2172886..2174485expressed protein
LOC_Os05g04660OsAffx.4251.1.S1_at10/115+2174462..2175921uncharacterized domain 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4168.1.S1_s_at--975--6471Chr05:2155821..2155845 (25 bp)
GATAGAGAACCAGCTACGCGAAAAT
LOC_Os05g04630
Os.4168.1.S1_s_at--894--1211Chr05:2155960..2155984 (25 bp)
AGTTATGTGAGCGTCTACCAAGCCC
LOC_Os05g04630
Os.4168.1.S1_s_at--517--2971Chr05:2155986..2156010 (25 bp)
AATGGAGAATCAACTGTCAGCTGCC
LOC_Os05g04630
Os.4168.1.S1_s_at--235--7111Chr05:2156001..2156025 (25 bp)
GTCAGCTGCCATCAAATCTCGAAGA
LOC_Os05g04630
Os.4168.1.S1_s_at--973--9171Chr05:2156026..2156050 (25 bp)
TGCCTAATCTTGCATTCACCATTGC
LOC_Os05g04630
Os.4168.1.S1_s_at--7--5691Chr05:2156057..2156081 (25 bp)
GACATTTATTCTTACACCAGAGCAG
LOC_Os05g04630
Os.4168.1.S1_s_at--341--9571Chr05:2156778..2156802 (25 bp)
TCTTCATGGGTGCTTATCATACGGT
LOC_Os05g04630
Os.4168.1.S1_s_at--1078--351Chr05:2156793..2156817 (25 bp)
ATCATACGGTTTTCGACTTCGGCAA
LOC_Os05g04630
Os.4168.1.S1_s_at--1103--6391Chr05:2156824..2156848 (25 bp)
GATCGGGTTCGCTAAATCTGCATGA
LOC_Os05g04630
Os.4168.1.S1_s_at--459--6951Chr05:2156858..2156882 (25 bp)
GTAGATCACTCTTCAGATCACGGAG
LOC_Os05g04630
Os.4168.1.S1_s_at--973--6951Chr05:2156939..2156963 (25 bp)
GTAGCTAGTACACGGACAAACCTCT
LOC_Os05g04630
Target Sequence 
GATAGAGAACCAGCTACGCGAAAATAAAACGAAGGAGCTGATATTGAATTATGCTAATCAGTTATGTGAGCGTCTACCAA
GCCCCAATGGAGAATCAACTGTCAGCTGCCATCAAATCTCGAAGATGCCTAATCTTGCATTCACCATTGCAAACAAGACA
TTTATTCTTACACCAGAGCAGTACATCGTGAAACTGGAGCAAGGAGGGCAAACCGTCTGCATCAGCGGGTTCATGGCGTT
CGACATACCTCCACCACGCGGTCCTCTTTGGATTCTTGGAGATGTCTTCATGGGTGCTTATCATACGGTTTTCGACTTCG
GCAAAGACAGGATCGGGTTCGCTAAATCTGCATGAAGAGTGTATGTAGATCACTCTTCAGATCACGGAGATTAGCCTGTA
TATTTCATAAGCTGAAACCAAACATGTATGGTTTTATGATATATAGTAGCTAGTACACGGACAAACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4168.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis