Browse Element(s) Details


Os.41901.1.S1_at

Description gb:CA760287
DB_XREF= gi:25804326
DB_XREF=BR060008A20C07.ab1
CLONE=BR060008A20C07.ab1
TID=Os.41901.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0510F09.19 (P0510F09.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5119011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51154Os.7810.1.S1_at11/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51154OsAffx.23742.1.S1_at8/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51170Os.15143.1.S1_at11/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51170Os.52395.1.S1_x_at1/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51180Os.35344.18.S1_x_at10/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180Os.35344.3.S1_x_at8/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_at7/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_x_at4/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51190Os.41901.1.S1_x_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.41901.1.S1_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.20628.1.S1_at8/111+29750433..29754868expressed protein
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed
LOC_Os01g51210Os.12736.1.S1_x_at11/111+29764143..29766710lysine decarboxylase, putative, expressed
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41901.1.S1_at--1037--8751Chr01:29752872..29752896 (25 bp)
TGTAGTGTGGGCTGCAGTGCTGTGG
LOC_Os01g51190
Os.41901.1.S1_at--194--4771Chr01:29752882..29752906 (25 bp)
GCTGCAGTGCTGTGGGATTTGTTTA
LOC_Os01g51190
Os.41901.1.S1_at--237--5031Chr01:29752885..29752909 (25 bp)
GCAGTGCTGTGGGATTTGTTTATCA
LOC_Os01g51190
Os.41901.1.S1_at--127--7311Chr01:29752888..29752910 (23 bp)
GTGCTGTGGGATTTGTTTATCAGAC
LOC_Os01g51190
Os.41901.1.S1_at--697--9731Chr01:29754312..29754336 (25 bp)
TAATTGCTCGGCTACCCAGATCTAT
LOC_Os01g51190
Os.41901.1.S1_at--1139--3151Chr01:29754313..29754337 (25 bp)
AATTGCTCGGCTACCCAGATCTATG
LOC_Os01g51190
Os.41901.1.S1_at--1021--9091Chr01:29754316..29754340 (25 bp)
TGCTCGGCTACCCAGATCTATGCAG
LOC_Os01g51190
Os.41901.1.S1_at--149--3791Chr01:29754318..29754342 (25 bp)
CTCGGCTACCCAGATCTATGCAGAA
LOC_Os01g51190
Os.41901.1.S1_at--990--3931Chr01:29754320..29754344 (25 bp)
CGGCTACCCAGATCTATGCAGAAGT
LOC_Os01g51190
Os.41901.1.S1_at--684--8311Chr01:29754321..29754345 (25 bp)
GGCTACCCAGATCTATGCAGAAGTT
LOC_Os01g51190
Os.41901.1.S1_at--736--4852Chr02:6742290..6742323 (24 bp)
GCTACCCAGATCTATGCAGAAGTTT
NONE
Target Sequence 
TGTAGTGTGGGCTGCAGTGCTGTGGGATTTGTTTATCAGACTCGAGGTCTGAAGCATGGAAGGGCAATTGTTGTGTCCAC
TTGTACATCAGTTGCATCTATTGTGTCTGGCGTTGTAGCTGGTATGATTGCGCTTGATGAACATCTTCCCACAGCTCCCA
CGGGCCGCTTTTTTCTCTTACTTGGATGGNTCTTCATTATTACAGGAGTGATACTTCTTGTTAGTTCAACCCGNATAATT
GCTCGGCTACCCAGATCTATGCAGAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis