Browse Element(s) Details


Os.41918.1.S1_at

Description gb:NM_191635.1
DB_XREF= gi:34910353
GEN=P0684B02.11
TID=Os.41918.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684B02.11 (P0684B02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0684B02.11 (P0684B02.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g199508/11expressed protein
LOC_Os02g319202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19924OsAffx.24336.1.S1_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.24336.1.S1_x_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12124.1.S1_at10/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.1.S1_x_at6/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.52238.1.S1_at3/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.3.S1_x_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.49936.2.A1_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.15708.1.S1_at1/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19950Os.41918.1.S1_x_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.41918.1.S1_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.47711.1.A1_s_at5/112+11737374..11741808expressed protein
LOC_Os02g19950Os.28219.1.S1_at3/112+11737374..11741808expressed protein
LOC_Os02g19960NANA2+11743444..11743953transposon protein, putative, unclassified
LOC_Os02g19970Os.51076.1.S1_at11/112+11749118..11753707tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19980OsAffx.2692.1.S1_at11/112+11755497..11757579hypothetical protein
LOC_Os02g19990Os.57017.1.S1_at11/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g19990Os.49538.1.S1_at1/112+11758498..11762729Reticulon family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41918.1.S1_at--35--5432Chr02:18853858..18854190 (25 bp)
GAAGCCGGACACTGATGCTTGCACT
NONE
Os.41918.1.S1_at--877--1672Chr02:18853860..18854192 (25 bp)
AGCCGGACACTGATGCTTGCACTGA
NONE
Os.41918.1.S1_at--622--4252Chr02:18853862..18854194 (25 bp)
CCGGACACTGATGCTTGCACTGATG
NONE
Os.41918.1.S1_at--1103--8134Chr04:18961859..18961879 (21 bp)
GGACACTGATGCTTGCACTGATGTA
NONE
Os.41918.1.S1_at--792--3312Chr02:11740914..11740937 (24 bp)
CACTGATGCTTGCACTGATGTACCA
LOC_Os02g19950
Os.41918.1.S1_at--647--3853Chr02:18854177..18854292 (25 bp)
CTGATGCTTGCACTGATGTACCATG
LOC_Os02g31920
Os.41918.1.S1_at--674--6333Chr04:18961862..18962052 (25 bp)
GATGCTTGCACTGATGTACCATGTT
NONE
Os.41918.1.S1_at--1120--633Chr04:18961863..18962053 (25 bp)
ATGCTTGCACTGATGTACCATGTTG
NONE
Os.41918.1.S1_at--129--4932Chr02:11740907..11740931 (25 bp)
GCTTGCACTGATGTACCATGTTGTC
LOC_Os02g19950
Os.41918.1.S1_at--772--10732Chr02:11740905..11740929 (25 bp)
TTGCACTGATGTACCATGTTGTCAT
LOC_Os02g19950
Os.41918.1.S1_at--296--5112Chr02:11740903..11740927 (25 bp)
GCACTGATGTACCATGTTGTCATGG
LOC_Os02g19950
Target Sequence 
GAAGCCGGACACTGATGCTTGCACTGATGTACCATGTTGTCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis