Browse Element(s) Details


Os.41980.1.S1_at

Description gb:CA765415
DB_XREF= gi:27547281
DB_XREF=AF53-Rpf_07_G16_T7_060.ab1
CLONE=C0002464
TID=Os.41980.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine kinase (B1100D10.34), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g574908/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g57450Os.34258.1.S1_at10/111+33525414..33528581universal stress protein, putative, expressed
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed
LOC_Os01g57470Os.9073.1.S1_at11/111+33534501..33535541EF hand family protein, expressed
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed
LOC_Os01g57520NANA1+33561093..33561932hypothetical protein
LOC_Os01g57530OsAffx.11636.1.S1_at11/111+33563967..33564182hypothetical protein
LOC_Os01g57540OsAffx.23824.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540Os.56252.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540OsAffx.23824.1.S1_x_at10/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57550Os.27073.1.S1_at11/111+33571590..33575256nodulation protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41980.1.S1_at--1159--211Chr01:33549042..33549066 (25 bp)
ATATAACGCATGTCCAGAGCATAAG
LOC_Os01g57490
Os.41980.1.S1_at--880--10751Chr01:33549070..33549094 (25 bp)
TTGAGATGCATTCATGTCGGCCTGA
LOC_Os01g57490
Os.41980.1.S1_at--626--7291Chr01:33549096..33549120 (25 bp)
GTGCGTACAGGAGAGTCCCATCAAT
LOC_Os01g57490
Os.41980.1.S1_at--189--10631Chr01:33549196..33549220 (25 bp)
TTCGTCTCCGCTGGGATTTGGACTG
LOC_Os01g57490
Os.41980.1.S1_at--982--10811Chr01:33549213..33549237 (25 bp)
TTGGACTGAAGCTGGTGTTCACGGA
LOC_Os01g57490
Os.41980.1.S1_at--340--6171Chr01:33549236..33549260 (25 bp)
GAGGAACACACTCCATAAACGGAAT
LOC_Os01g57490
Os.41980.1.S1_at--547--2231Chr01:33549262..33549286 (25 bp)
ACAATTTCCGACACGCAAGGTAGAT
LOC_Os01g57490
Os.41980.1.S1_at--1056--8551NONE
TGGTGCCTCTTAATTGAACCTTCCT
NONE
Os.41980.1.S1_at--77--10011NONE
TAGCAACCGGGTATGCTTTGCAAGG
NONE
Os.41980.1.S1_at--744--1831NONE
ACAACGGTTTCCTCAGTGTTTGGAG
NONE
Os.41980.1.S1_at--140--8671Chr01:33549541..33549770 (25 bp)
TGTGGCTCGGCTTTTGTTAAATTGA
LOC_Os01g57490
Target Sequence 
ATATAACGCATGTCCAGAGCATAAGGTATTGAGATGCATTCATGTCGGCCTGATGTGCGTACAGGAGAGTCCCATCAATC
GNCCTACCATGACCGAGATAATTTCAGCGCTTGATAANGAAAGCACCACCCTGCCTGAACCGAAGCAGCCTGCCTTCGTC
TCCGCTGGGATTTGGACTGAAGCTGGTGTTCACGGAGGAACACACTCCATAAACGGAATGACAATTTCCGACACGCAAGG
TAGATAGTATCATGTCAATTAATTGGTGCCTCTTAATTGAACCTTCCTGATGTGAAACTCTAAAGAACTTAGCAACCGGG
TATGCTTTGCAAGGGTGGTCAGAGGTGTATCTATACGGTATCTACATAGAGCTTAGGGGGGTAGGGGGGTGGATACAATT
TTCCCGAAAACAGCACACCGAACCGAAACAACGGTTTCCTCAGTGTTTGGAGTGACGTTCGGTTTTCCTTTTTACATACT
TGGGTGATCGGTGTGTGGCTCGGCTTTTGTTAAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis