Browse Element(s) Details


Os.42065.1.S1_x_at

Description gb:NM_191333.1
DB_XREF= gi:34909749
GEN=P0460E08.27
TID=Os.42065.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, MSL1.21 (P0460E08.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, MSL1.21 (P0460E08.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g555903/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein
LOC_Os01g55570Os.9814.1.S1_at11/111+32341302..32343122expressed protein
LOC_Os01g55580Os.26583.2.S1_x_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55580Os.26583.1.A1_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed
LOC_Os01g55620OsAffx.13041.1.S1_x_at8/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_x_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.1.S1_at3/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620Os.28110.1.S1_x_at1/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55630OsAffx.11615.1.S1_at11/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.8013.1.S1_at3/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.22346.1.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630OsAffx.27508.71.S1_s_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.12807.2.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55640NANA1+32384003..32384981Seven in absentia protein family protein
LOC_Os01g55650Os.13102.1.S1_at11/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55650Os.13102.1.S2_at5/111+32384248..32389677patatin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42065.1.S1_x_at--229--7891Chr01:32358106..32358130 (25 bp)
GGTTCTTCAAGACTGGTGATACAGT
NONE
Os.42065.1.S1_x_at--567--10531Chr01:32358153..32358291 (25 bp)
TTCATAATTTTAGGGCGCACAAATG
NONE
Os.42065.1.S1_x_at--1082--2231Chr01:32358334..32358356 (23 bp)
AAATTGAGTCAGTGCTGTTACAGCA
NONE
Os.42065.1.S1_x_at--552--6771Chr01:32358350..32358615 (25 bp)
GTTACAGCATGAAATTGTCCTGGAA
NONE
Os.42065.1.S1_x_at--419--8711Chr01:32358606..32358630 (25 bp)
TGTCCTGGAATGTGCTGTTCTCGGC
NONE
Os.42065.1.S1_x_at--382--9091Chr01:32358618..32358642 (25 bp)
TGCTGTTCTCGGCTTACCTGACGAA
NONE
Os.42065.1.S1_x_at--867--10431Chr01:32358631..32358655 (25 bp)
TTACCTGACGAAGCTTATGGAGAGA
NONE
Os.42065.1.S1_x_at--502--2771Chr01:32358696..32358720 (25 bp)
AAGAGCTGAACTGGACTCGAAACCA
NONE
Os.42065.1.S1_x_at--311--6591Chr01:32359109..32359133 (25 bp)
GATTCCTACGAGGTTGTACTTATGG
LOC_Os01g55590
Os.42065.1.S1_x_at--860--7911Chr01:32359120..32359144 (25 bp)
GGTTGTACTTATGGGATTCGCTTCC
LOC_Os01g55590
Os.42065.1.S1_x_at--922--791Chr01:32359130..32359154 (25 bp)
ATGGGATTCGCTTCCTCGGAATGCC
LOC_Os01g55590
Target Sequence 
GGTTCTTCAAGACTGGTGATACAGTAACTGTAGACGATGAAGNNNNNTTCATAATTTTAGGGCGCACAAATGNCTGACAT
CNATGAAAGTTGGTGGTTATAANCTGTCTGCATTAGAAATTGAGTCAGTGCTGTTACAGCATGAAATTGTCCTGGAATGT
GCTGTTCTCGGCTTACCTGACGAAGCTTATGGAGAGATTATCTGTGCNATAATTGTGCCTAAGGAGGACTCNAAGAAAAG
AGCTGAACTGGACTCGAAACCAGCNCTGACCTTGGAAGCACTGACNAGTTGGTCAAANGATAAGCTTGCTCCATACANGA
TTCCTACGAGGTTGTACTTATGGGATTCGCTTCCTCGGAATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42065.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis