Browse Element(s) Details


Os.42067.1.S1_at

Description gb:AK107573.1
DB_XREF= gi:32992782
TID=Os.42067.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0460E08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D05, full insert sequence.
FL= gb:AK107573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5556010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55520Os.11073.1.S1_at9/111+32313349..32316046pollen-specific kinase partner protein, putative, expressed
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55560Os.42067.2.S1_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.2.S1_x_at11/111+32337326..32340070expressed protein
LOC_Os01g55560Os.42067.1.S1_at10/111+32337326..32340070expressed protein
LOC_Os01g55570Os.9814.1.S1_at11/111+32341302..32343122expressed protein
LOC_Os01g55580Os.26583.2.S1_x_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55580Os.26583.1.A1_at11/111+32343502..32349249Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0045010biological_processactin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42067.1.S1_at--520--8071Chr01:32338556..32338580 (25 bp)
GGAGCAATTCTTACTTTCAAGCCAT
LOC_Os01g55560
Os.42067.1.S1_at--845--1331Chr01:32337982..32338006 (25 bp)
AGAGAACGTTCGGTGGCAACTACAG
LOC_Os01g55560
Os.42067.1.S1_at--1007--3671Chr01:32337750..32337942 (25 bp)
CTTTCAGAGCAGAGGACGTTCCCAT
LOC_Os01g55560
Os.42067.1.S1_at--618--8111Chr01:32337737..32337761 (25 bp)
GGACGTTCCCATTGTTCTAGCTGAA
LOC_Os01g55560
Os.42067.1.S1_at--140--8271Chr01:32337691..32337715 (25 bp)
GGCAGCAATATCTTGTCATTTATCA
LOC_Os01g55560
Os.42067.1.S1_at--252--9011Chr01:32337646..32337670 (25 bp)
TAAGAGCCAAAAGCGCCACCGGAAT
LOC_Os01g55560
Os.42067.1.S1_at--666--9431NONE
TCGGGACTGGATATATGCACGCATA
NONE
Os.42067.1.S1_at--50--9011Chr01:32337544..32337568 (25 bp)
TGAATCCCCAATTTCTGTCAAACCA
LOC_Os01g55560
Os.42067.1.S1_at--883--7451Chr01:32337519..32337543 (25 bp)
GTGTCCATTGACCATCATGTATGTT
LOC_Os01g55560
Os.42067.1.S1_at--768--7271Chr01:32337481..32337505 (25 bp)
GTGCCAGCAGTAAATTCGGCCCGAT
LOC_Os01g55560
Os.42067.1.S1_at--356--8411Chr01:32337464..32337488 (25 bp)
GGCCCGATCATCCTGAACATGTAAC
LOC_Os01g55560
Target Sequence 
GGAGCAATTCTTACTTTCAAGCCATATGATATTCAGTCAACCATTGGGAGAGAACGTTCGGTGGCAACTACAGACTCTGA
AAGCCCAACAACGGATGCAAAGAGTTCATTCTCTTTCAGAGCAGAGGACGTTCCCATTGTTCTAGCTGAACACAGGAAGA
AGGCAAATCATGGCAGCAATATCTTGTCATTTATCAGGAAAGGTAGACGGCATGCGTAAGAGCCAAAAGCGCCACCGGAA
TAGCTCGGGACTGGATATATGCACGCATACTTTAATGAATTCAGTATTGATTGGCAACAATGTACAACCTAATATCACTG
AATCCCCAATTTCTGTCAAACCAGTGTCCATTGACCATCATGTATGTTTAGCTTTGCATTTGTGCCAGCAGTAAATTCGG
CCCGATCATCCTGAACATGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis