Browse Element(s) Details

Os.4216.2.S1_x_at

Description

gb:AK067977.1
DB_XREF= gi:32977995
TID=Os.4216.2
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU058081(E3082),AU075427(E30384) correspond to a region of the predicted gene.~Similar to Spinacia oleracea proteasome 27 kD subunit (P52427) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123K20, full insert sequence.
FL= gb:AK067977.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07140	11/11	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878	6/11	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07978	6/11	Proteasome subunit alpha type 4, putative
LOC_Os07g28590	1/11	transposon protein, putative, CACTA, En/Spm sub-class, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07110	Os.40855.5.S1_x_at	11/11	6	+	3395348..3400021	hypothetical protein
LOC_Os06g07110	Os.40360.1.S1_at	9/11	6	+	3395348..3400021	hypothetical protein
LOC_Os06g07110	Os.40360.1.S1_x_at	6/11	6	+	3395348..3400021	hypothetical protein
LOC_Os06g07120	Os.7478.1.S1_at	11/11	6	+	3404169..3406719	undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07120	Os.7478.2.S1_x_at	10/11	6	+	3404169..3406719	undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07130	Os.34965.2.S1_s_at	11/11	6	+	3407661..3417592	Leucine Rich Repeat family protein, expressed
LOC_Os06g07130	Os.7011.1.S2_x_at	1/11	6	+	3407661..3417592	Leucine Rich Repeat family protein, expressed
LOC_Os06g07140	Os.4216.1.S1_a_at	11/11	6	+	3419508..3420519	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07140	Os.4216.2.S1_x_at	11/11	6	+	3419508..3420519	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07150	OsAffx.22574.1.S1_at	8/11	6	+	3424691..3425038	hypothetical protein
LOC_Os06g07160	Os.33725.1.S1_at	11/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07160	Os.51581.1.S1_at	1/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07170	NA	NA	6	+	3432634..3433780	hypothetical protein
LOC_Os06g07180	OsAffx.27485.1.S1_at	10/11	6	+	3436575..3437625	expressed protein
LOC_Os06g07190	Os.49094.1.S1_at	8/11	6	+	3439121..3442076	expressed protein
LOC_Os06g07200	OsAffx.15295.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	Os.18952.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	OsAffx.15295.1.S1_x_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolism
GO:0005634	cellular_component	nucleus
GO:0005819	cellular_component	spindle
GO:0005839	cellular_component	proteasome core complex (sensu Eukaryota)
GO:0009524	cellular_component	phragmoplast
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0008233	molecular_function	peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4216.2.S1_x_at--372--303	3	Chr06:3869499..3869523 (25 bp)	AATCCCTCTGCGACACCAAGCAGGG	LOC_Os06g07978
Os.4216.2.S1_x_at--388--1065	3	Chr06:3869570..3869594 (25 bp)	TTCGCCGGCTGGGACAAGCACCATG	LOC_Os06g07978
Os.4216.2.S1_x_at--1024--85	4	Chr07:16729559..16729583 (25 bp)	ATGGCTTCCAGCTCTACATGAGCGA	LOC_Os07g28590
Os.4216.2.S1_x_at--404--91	3	Chr06:3869670..3869694 (25 bp)	AGGCGGCGCAGTCCATGCTCAAGCA	LOC_Os06g07978
Os.4216.2.S1_x_at--829--517	3	Chr06:3869754..3869778 (25 bp)	GCAAGACCATGGATTCGACCAGCTT	LOC_Os06g07978
Os.4216.2.S1_x_at--13--1063	3	Chr06:3869767..3869791 (25 bp)	TTCGACCAGCTTGACCGCCGAGAAG	LOC_Os06g07978
Os.4216.2.S1_x_at--372--417	1	Chr06:3420333..3420357 (25 bp)	CGCCTGAGGCTTGATGTGCTGGTTT	LOC_Os06g07140
Os.4216.2.S1_x_at--218--1029	1	Chr06:3420355..3420379 (25 bp)	TTTGCTGTGCCTTGTGATGCCTGCT	LOC_Os06g07140
Os.4216.2.S1_x_at--1083--885	1	Chr06:3420369..3420393 (25 bp)	TGATGCCTGCTGCTCTTAGATGGTT	LOC_Os06g07140
Os.4216.2.S1_x_at--567--477	1	Chr06:3420377..3420401 (25 bp)	GCTGCTCTTAGATGGTTTTATCATT	LOC_Os06g07140
Os.4216.2.S1_x_at--1147--487	1	Chr06:3420407..3420431 (25 bp)	GCTTCTTGTTATCTAAACCAAACTA	LOC_Os06g07140

Target Sequence

AATCCCTCTGCGACACCAAGCAGGGGTACACCCAGTTCGGCGGCCTCCGCCCCTTCGGCGTCTCCTTCCTCTTCGCCGGC
TGGGACAAGCACCATGGCTTCCAGCTCTACATGAGCGATCCCTCCGGCAACTACAGCGGCTGGAAGGCCGCGGCCGTCGG
GGCCAACAGCCAGGCGGCGCAGTCCATGCTCAAGCAGGACTACCGCGACGGCCTGACCCGGGAGGAGGCCGTAGCCCTCG
CCCTCAAGGTCCTGAGCAAGACCATGGATTCGACCAGCTTGACCGCCGAGAAGCTGGAGCTCGCCGAGGTGTTCCTGCAG
CCCGGCACCGGGGAAGTGCAGTACCAGGTGTGCTCCCCTGAGGCGATGGGGAAGCTGCTCGCCAAGGCCGGCCTNTCGCA
GCCGGCGCCTGAGGCTTGATGTGCTGGTTTGCTGTGCCTTGTGATGCCTGCTGCTCTTAGATGGTTTTATCATTATTATG
CTTCTTGTTATCTAAACCAAACTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis