Browse Element(s) Details


Os.42318.2.S1_x_at

Description gb:NM_190848.1
DB_XREF= gi:34908779
GEN=P0415A04.27
TID=Os.42318.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42318 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) disease resistance protein-like (P0415A04.27), mRNA.
PROD=disease resistance protein-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5787011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57810NANA1+33762717..33765923hypothetical protein
LOC_Os01g57830Os.14919.1.S1_at2/111+33769654..33773560hypothetical protein
LOC_Os01g57830OsAffx.29313.1.S1_at1/111+33769654..33773560hypothetical protein
LOC_Os01g57840Os.33787.1.S1_at11/111+33775154..33776194expressed protein
LOC_Os01g57854Os.27505.1.S1_at11/111+33780283..33786927Pectinesterase family protein, expressed
LOC_Os01g57870Os.42318.1.S1_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57870Os.42318.2.S1_x_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42318.2.S1_x_at--731--7511Chr01:33788117..33788141 (25 bp)
GTGGATCGCGAGCTGCAACAACTTA
LOC_Os01g57870
Os.42318.2.S1_x_at--921--5611Chr01:33788046..33788070 (25 bp)
GACAACCTGATGTTATCTCGCAAAG
LOC_Os01g57870
Os.42318.2.S1_x_at--782--10411Chr01:33788009..33788033 (25 bp)
TTATTCCAATGACGAGCAGCCCATC
LOC_Os01g57870
Os.42318.2.S1_x_at--999--10151Chr01:33787967..33787991 (25 bp)
TATCATCCTTCAGGCACTTCATAAG
LOC_Os01g57870
Os.42318.2.S1_x_at--173--7031Chr01:33787895..33787919 (25 bp)
GTACATCTGGTATTGCCATGGGCTG
LOC_Os01g57870
Os.42318.2.S1_x_at--36--5231Chr01:33787803..33787827 (25 bp)
GAATTTGCAGAGACATCACACCCTT
LOC_Os01g57870
Os.42318.2.S1_x_at--536--2751Chr01:33787767..33787791 (25 bp)
AAGAACTGTATCTCCATGGCTTGGC
LOC_Os01g57870
Os.42318.2.S1_x_at--852--851Chr01:33787752..33787776 (25 bp)
ATGGCTTGGCAAACTGCAGGGCATT
LOC_Os01g57870
Os.42318.2.S1_x_at--858--5431Chr01:33787688..33787712 (25 bp)
GAACCTGAAGATTGTCGACTGCCCG
LOC_Os01g57870
Os.42318.2.S1_x_at--263--2691Chr01:33787663..33787687 (25 bp)
AAGCTGAAGAAGCTCGAGCTCCCTG
LOC_Os01g57870
Os.42318.2.S1_x_at--319--1591Chr01:33787647..33787671 (25 bp)
AGCTCCCTGTCGGTAATCTGAATGC
LOC_Os01g57870
Target Sequence 
GTGGATCGCGAGCTGCAACAACTTAGCGGAGGTAATCATCGATGGCAACACAGAAACTGACCACATGTATAGACAACCTG
ATGTTATCTCGCAAAGCCGGGGAGATCATTATTCCAATGACGAGCAGCCCATCCTTCCAAACCTGCAAAATATCATCCTT
CAGGCACTTCATAAGGTAAAGATCATCTACAAATCCGGATGTGTCCAGAACATAACATCGTTGTACATCTGGTATTGCCA
TGGGCTGGAGGAGCTGATTACTCTCAGCGATGATGAACAAGGAACAGCGGCAAACAGCAGTGAACAAGCTGCAAGAATTT
GCAGAGACATCACACCCTTCCCTAACCTCAAAGAACTGTATCTCCATGGCTTGGCAAACTGCAGGGCATTGTGCAGCACT
ACGTGCTTCCTGCGGTTCCCCTTGCTGGGGAACCTGAAGATTGTCGACTGCCCGAAGCTGAAGAAGCTCGAGCTCCCTGT
CGGTAATCTGAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42318.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis